Miyakogusa Predicted Gene
- Lj1g3v4694450.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4694450.1 Non Chatacterized Hit- tr|I3SLP5|I3SLP5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.06,0,zinc
finger,Zinc finger, CCCH-type; RNA recognition motif,RNA recognition
motif domain, eukaryote; U,CUFF.32961.1
(960 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome... 1895 0.0
gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 159 4e-38
gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromoso... 159 4e-38
gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome... 151 9e-36
gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosom... 141 9e-33
gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA seque... 141 9e-33
gnl|LJGI|TC82553 similar to UniRef100_A7NZC0 Cluster: Chromosome... 105 5e-22
gnl|LJGI|TC71454 similar to UniRef100_A7PPK3 Cluster: Chromosome... 98 1e-19
gnl|LJGI|DC600059 96 5e-19
gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA seque... 84 2e-15
>gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1346
Score = 1895 bits (956), Expect = 0.0
Identities = 959/960 (99%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 205
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 265
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatgaatctcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatgaatctcaac 325
Query: 181 atcatcacgcagccgaatcagccgcagcatcagcctcagcctcttgaccctgacaagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atcatcacgcagccgaatcagccgcagcatcagcctcagcctcttgaccctgacaagctt 385
Query: 241 caggatcattttgatgatttctatgaagatctgtttcaggagcttagcaagtatggccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caggatcattttgatgatttctatgaagatctgtttcaggagcttagcaagtatggccag 445
Query: 301 atccagagcttgaatatttgtgacaatttggctgatcacatggttggcaatgtatatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atccagagcttgaatatttgtgacaatttggctgatcacatggttggcaatgtatatgtt 505
Query: 361 cagtataaagaggaagatcatgctgctaatgctctgatgaatcttactggaagattttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagtataaagaggaagatcatgctgctaatgctctgatgaatcttactggaagattttat 565
Query: 421 tcaggtcgacccatcattgccgacttttctcctgttacggattttcgagaagctacttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaggtcgacccatcattgccgacttttctcctgttacggattttcgagaagctacttgt 625
Query: 481 aggcagtatgaggaaaatgtatgcaatcgaggtggctactgcaacttcatgcacttaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aggcagtatgaggaaaatgtatgcaatcgaggtggctactgcaacttcatgcacttaaag 685
Query: 541 aaaattagcagggatctgagaaggcggctctttggaagaaataaccggtggaatgatcgc 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 686 aaaattagcagggatctgagaaggcggctctttggaagaaataagcggtggaatgatcgc 745
Query: 601 aggggaagtcggagccggagccgtagtcggagccctccgaggaatcggaactatgaggag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aggggaagtcggagccggagccgtagtcggagccctccgaggaatcggaactatgaggag 805
Query: 661 cgtccacagtttggtggtcgtggtggttctggtagaagagattttgacaggtctcatggc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cgtccacagtttggtggtcgtggtggttctggtagaagagattttgacaggtctcatggc 865
Query: 721 cgccatggtaggaagcctagaagccgtagtcctcctcgatttagaggaaaaagaagtaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cgccatggtaggaagcctagaagccgtagtcctcctcgatttagaggaaaaagaagtaga 925
Query: 781 agtcctgcaggcagggataggagccccgtcagagaaagtagtgcagaaaggagggctaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 agtcctgcaggcagggataggagccccgtcagagaaagtagtgcagaaaggagggctaaa 985
Query: 841 attgagcaatggaacagggagaaggaacaagatgacactggtcctaagaacaatactagc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 attgagcaatggaacagggagaaggaacaagatgacactggtcctaagaacaatactagc 1045
Query: 901 gatgattatgatgaactcgcgcaaaatggtagtgattctggtaaccatcagatatagcaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 gatgattatgatgaactcgcgcaaaatggtagtgattctggtaaccatcagatatagcaa 1105
>gnl|LJGI|TC82268 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 451
Score = 159 bits (80), Expect = 4e-38
Identities = 149/172 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 25 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 84
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
||||||||||||||||| |||||||| ||||| || || || | || |||||||| ||
Sbjct: 85 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 144
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatga 172
| |||| ||||||| | ||||||||||||||||||| | ||||||||||
Sbjct: 145 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatga 196
Score = 73.8 bits (37), Expect = 2e-12
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 343 gttggcaatgtatatgttcagtataaagaggaagatcatgctgctaatgctctgatgaat 402
||||| ||||| || ||||||| || ||||||||| ||||||| ||||||| | | ||||
Sbjct: 322 gttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaatgctgttaggaat 381
Query: 403 cttactggaagattttattcaggtcgacccatcattgccgacttttctcctgttacggat 462
|| |||||||| |||||| | ||||| || || |||| ||||| ||||| || ||||||
Sbjct: 382 ctcactggaaggttttatgctggtcgtccaattattgttgacttctctccggtgacggat 441
Query: 463 tttcg 467
|||||
Sbjct: 442 tttcg 446
>gnl|LJGI|TC73850 homologue to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 526
Score = 159 bits (80), Expect = 4e-38
Identities = 149/172 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 95 atggcggagcacttggcatcaatcttcggcacagagaaagacagagtgaattgcccattc 154
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
||||||||||||||||| |||||||| ||||| || || || | || |||||||| ||
Sbjct: 155 tacttcaagatcggagcatgcagacatggcgatcgctgctccaggctccacaccaaaccc 214
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatga 172
| |||| ||||||| | ||||||||||||||||||| | ||||||||||
Sbjct: 215 agcatcagccccaccattctcctctccaacatgtaccaacgccctgacatga 266
Score = 83.8 bits (42), Expect = 2e-15
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 331 gctgatcacatggttggcaatgtatatgttcagtataaagaggaagatcatgctgctaat 390
||||||||||||||||| ||||| || ||||||| || ||||||||| ||||||| ||||
Sbjct: 407 gctgatcacatggttggtaatgtgtacgttcagtttagagaggaagaacatgctggtaat 466
Query: 391 gctctgatgaatcttactggaagattttat 420
||| | | |||||| |||||||| ||||||
Sbjct: 467 gctgttaggaatctcactggaaggttttat 496
>gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (83%)
Length = 1286
Score = 151 bits (76), Expect = 9e-36
Identities = 148/172 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
|||||||||||| ||||||| || ||||| || ||||| ||| | || |||||||| |||
Sbjct: 131 atggcggagcacctggcatcaatattcggcaccgagaaggaccgcgttaactgccccttc 190
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
|||||||||||||| |||||||||||||||||||| || |||||||| |||| | ||
Sbjct: 191 tacttcaagatcggcgcctgcagacacggcgaccgctgctctcgcctccacaaccgcccc 250
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccagaggcctgacatga 172
| |||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct: 251 agcatctcccccaccctcctcctcgccaacatgtaccagagacccgacatga 302
Score = 67.9 bits (34), Expect = 1e-10
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 412 agattttattcaggtcgacccatcattgccgacttttctcctgttacggattttcgagaa 471
|||||||| || || || || |||||||| || || || |||||||| ||||| || ||
Sbjct: 524 agattttactccgggcggccgatcattgctgaattctcgcctgttactgatttccgtgag 583
Query: 472 gctacttgtaggcagtatgaggaaaatgtatgcaatcgaggtggctactgcaacttcatg 531
|| |||||||||||||||||||| ||| || || || ||||| |||||||||||||||
Sbjct: 584 gcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttactgcaacttcatg 643
Query: 532 ca 533
||
Sbjct: 644 ca 645
>gnl|LJGI|BW613015 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 487
Score = 141 bits (71), Expect = 9e-33
Identities = 137/159 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 98 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 157
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
|||||||||||||| |||||| | ||||||||||| || || ||||| ||||| || ||
Sbjct: 158 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 217
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccag 159
| |||| ||| || || | ||||||||||||||||||
Sbjct: 218 agcatcagcccaacgctgctactctccaacatgtaccag 256
>gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (60%)
Length = 661
Score = 141 bits (71), Expect = 9e-33
Identities = 137/159 (86%)
Strand = Plus / Plus
Query: 1 atggcggagcacttggcatcgatcttcggaacagagaaagacagagtgaactgcccattc 60
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 71 atggcggagcacttggcatcgatcttcggcaccgagaaagacagagtcaactgccctttc 130
Query: 61 tacttcaagatcggagcctgcagacacggcgaccgttgttctcgccttcacaccaagcct 120
|||||||||||||| |||||| | ||||||||||| || || ||||| ||||| || ||
Sbjct: 131 tacttcaagatcggcgcctgccgccacggcgaccgctgctcgcgcctccacacaaaacca 190
Query: 121 accatctcccccaccctcgtcctctccaacatgtaccag 159
| |||| ||| || || | ||||||||||||||||||
Sbjct: 191 agcatcagcccaacgctgctactctccaacatgtaccag 229
Score = 91.7 bits (46), Expect = 8e-18
Identities = 190/238 (79%)
Strand = Plus / Plus
Query: 317 tttgtgacaatttggctgatcacatggttggcaatgtatatgttcagtataaagaggaag 376
||||||| ||| | ||||||||||||||||| ||||| |||| ||||| | |||||||
Sbjct: 369 tttgtgataatctcgctgatcacatggttggtaatgtttatgctcagttcagggaggaag 428
Query: 377 atcatgctgctaatgctctgatgaatcttactggaagattttattcaggtcgacccatca 436
| || |||||| | || || | |||||| ||||||||||||||| | || || || |
Sbjct: 429 aacacgctgctgaggcgcttaagaatctcactggaagattttatgctggaaacccgatta 488
Query: 437 ttgccgacttttctcctgttacggattttcgagaagctacttgtaggcagtatgaggaaa 496
||| |||||||||||||| || || || || || |||||||| ||||||||||||||
Sbjct: 489 ttgtggacttttctcctgtaacagacttccgtgaggctacttgcaggcagtatgaggagg 548
Query: 497 atgtatgcaatcgaggtggctactgcaacttcatgcacttaaagaaaattagcaggga 554
|| || || || || ||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 549 attcttgtaaccggggaggctattgcaactttatgcacttgaaaaaaattagcaggga 606
>gnl|LJGI|TC82553 similar to UniRef100_A7NZC0 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 1304
Score = 105 bits (53), Expect = 5e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 343 gttggcaatgtatatgttcagtataaagaggaagatcatgctgctaatgctctgatgaat 402
||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 578 gttggaaatgtatatgttcagtaaaaagaggaagatcatgcccccaatgctctgatgaac 637
Query: 403 cttactggaagattttattca 423
|| ||||||||||||||||||
Sbjct: 638 ctcactggaagattttattca 658
Score = 79.8 bits (40), Expect = 3e-14
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 205 cagcatcagcctcagcctcttgaccctgacaagcttcaggatcattttgatgatttctat 264
||||| |||||||||||||| ||||| |||||||| ||||| || ||| | ||||||||
Sbjct: 492 cagcaccagcctcagcctctcgaccccgacaagctccaggaccactttaacaatttctat 551
Query: 265 gaagatctgtttcaggagcttagcaagt 292
|||||||| ||||||| ||| |||||||
Sbjct: 552 gaagatctctttcaggcgctcagcaagt 579
>gnl|LJGI|TC71454 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 580
Score = 97.6 bits (49), Expect = 1e-19
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 343 gttggcaatgtatatgttcagtataaagaggaagatcatgctgctaatgctctgatgaat 402
||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 345 gttggaaatgtatatgttcagtaaaaagaggaagatcatgcccccaatgctctgatgaac 286
Query: 403 cttactggaagattttattcaggtc 427
|| ||||||||||||| ||||||||
Sbjct: 285 ctcactggaagatttt-ttcaggtc 262
Score = 56.0 bits (28), Expect = 4e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 257 atttctatgaagatctgtttcaggagcttagcaagt 292
|||||||||||||||| ||||||||||| |||||||
Sbjct: 379 atttctatgaagatctctttcaggagctcagcaagt 344
>gnl|LJGI|DC600059
Length = 572
Score = 95.6 bits (48), Expect = 5e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 343 gttggcaatgtatatgttcagtataaagaggaagatcatgctgctaatgctctgatgaat 402
||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 309 gttggaaatgtatatgttcagtaaaaagaggaagatcatgcccccaatgctctgatgaac 368
Query: 403 cttactggaagatttt 418
|| |||||||||||||
Sbjct: 369 ctcactggaagatttt 384
Score = 56.0 bits (28), Expect = 4e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 257 atttctatgaagatctgtttcaggagcttagcaagt 292
|||||||||||||||| ||||||||||| |||||||
Sbjct: 275 atttctatgaagatctctttcaggagctcagcaagt 310
>gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (30%)
Length = 765
Score = 83.8 bits (42), Expect = 2e-15
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 457 acggattttcgagaagctacttgtaggcagtatgaggaaaatgtatgcaatcgaggtggc 516
||||||||||| || |||||||| |||||||||||||| ||| ||||| || |||||
Sbjct: 9 acggattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccgtggtggt 68
Query: 517 tactgcaacttcatgcacttaaagaaaattagcaggga 554
|| ||||||||||||||||| || | ||||||||||||
Sbjct: 69 tattgcaacttcatgcacttgaaaagaattagcaggga 106