Miyakogusa Predicted Gene
- Lj1g3v4694420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4694420.1 tr|F4K3N3|F4K3N3_ARATH Small RNA degrading
nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=4
SV=1,44.85,4e-18,RNase_T,Exonuclease, RNase T/DNA polymerase III;
Ribonuclease H-like,Ribonuclease H-like domain; no ,CUFF.33291.1
(1338 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60007 weakly similar to UniRef100_Q9FH89 Cluster: Emb... 1195 0.0
gnl|LJGI|TC58533 weakly similar to UniRef100_Q0J9I1 Cluster: Os0... 769 0.0
gnl|LJGI|FS349766 similar to UniRef100_A7Q0F7 Cluster: Chromosom... 482 e-135
gnl|LJGI|FS323298 weakly similar to UniRef100_Q0J9I1 Cluster: Os... 254 1e-66
>gnl|LJGI|TC60007 weakly similar to UniRef100_Q9FH89 Cluster: Emb|CAB62118.1; n=1;
Arabidopsis thaliana|Rep: Emb|CAB62118.1 - Arabidopsis
thaliana (Mouse-ear cress), partial (5%)
Length = 1039
Score = 1195 bits (603), Expect = 0.0
Identities = 606/607 (99%)
Strand = Plus / Plus
Query: 732 gctgcttctgcacgggataccaacctctgtaaacattgaaacactacataaaattgttcc 791
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2 gctgcttctgcacgggataccaacctctgtaaacatcgaaacactacataaaattgttcc 61
Query: 792 tggagacttcacaacagaagtgaagccatccaggaaaggtcaaagagcgaaatattctgc 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tggagacttcacaacagaagtgaagccatccaggaaaggtcaaagagcgaaatattctgc 121
Query: 852 tttagctacctttaagaatcaacaagaggcatatgaggcctatgaaaatgtccaaggaag 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttagctacctttaagaatcaacaagaggcatatgaggcctatgaaaatgtccaaggaag 181
Query: 912 ccaaacaaaggattcatttggacgtccacagaaagaagtcatgtttcagccaagtacagg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccaaacaaaggattcatttggacgtccacagaaagaagtcatgtttcagccaagtacagg 241
Query: 972 catgactgtgagtctatttgttcggaaaatgacagctgatgaacccgataacctgcttca 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 catgactgtgagtctatttgttcggaaaatgacagctgatgaacccgataacctgcttca 301
Query: 1032 atctaagagagctttgcaagtggatgaggcagatgaggcagttaatgcttccaaaaaagc 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atctaagagagctttgcaagtggatgaggcagatgaggcagttaatgcttccaaaaaagc 361
Query: 1092 aaagacggttcctcaaattgaagaggatgccctgataggctctactaagggtgacacttg 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaagacggttcctcaaattgaagaggatgccctgataggctctactaagggtgacacttg 421
Query: 1152 cacccacttgaaagagattgaagcactgaatgaacaattgaagcaaaaagatttggagat 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cacccacttgaaagagattgaagcactgaatgaacaattgaagcaaaaagatttggagat 481
Query: 1212 tgaatcgttgagggagcagttaagaaagagagattttgaagtctccaagctgcatataat 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgaatcgttgagggagcagttaagaaagagagattttgaagtctccaagctgcatataat 541
Query: 1272 gatatcctccttgaaaaagcgaacagacaaaacaaggaacaaatttgctgttctccagga 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatatcctccttgaaaaagcgaacagacaaaacaaggaacaaatttgctgttctccagga 601
Query: 1332 ggattga 1338
|||||||
Sbjct: 602 ggattga 608
>gnl|LJGI|TC58533 weakly similar to UniRef100_Q0J9I1 Cluster: Os04g0650600 protein;
n=1; Oryza sativa Japonica Group|Rep: Os04g0650600
protein - Oryza sativa subsp. japonica (Rice), partial
(30%)
Length = 801
Score = 769 bits (388), Expect = 0.0
Identities = 420/435 (96%)
Strand = Plus / Plus
Query: 1 atgcggcatcattcaaatcaatactcggtagagaaactgaaagataaatctcatgtttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 atgcggcatcattcaaatcaatactcggtagagaaactgaaagataaatctcatgattca 426
Query: 61 cctgagcaggggctagtccaaataactctccagcacccattatatccattggattattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctgagcaggggctagtccaaataactctccagcacccattatatccattggattattca 486
Query: 121 tttcaatcaattgatgagggatgggtaattataaacctcagnnnnnnnnnnnnngcgatg 180
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487 tttcaatcaattgatgagggatgggtaattataaacctcagaaaaaataaaaaagcgatg 546
Query: 181 aggtctactgcaatggttgctgttgattgtgaaatggttctctgtgaagatgggactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aggtctactgcaatggttgctgttgattgtgaaatggttctctgtgaagatgggactgaa 606
Query: 241 gcattagttgaagtctgtgtggtagaccacaatttaaaggtcaagctacacaaacgtgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcattagttgaagtctgtgtggtagaccacaatttaaaggtcaagctacacaaacgtgta 666
Query: 301 aaacccgacaaagcaattgtagactatagaacagaggttactggtgtttcttctcgagat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 667 aaacccgacaaagcaattgtagactatagaacagaggttactggtgtctcttctcgagat 726
Query: 361 ctagagacagttacgtgcaccttggctgatatacagaaaaagatgaagaggttgttatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctagagacagttacgtgcaccttggctgatatacagaaaaagatgaagaggttgttatca 786
Query: 421 aatggaaccatattg 435
|||||||||||||||
Sbjct: 787 aatggaaccatattg 801
>gnl|LJGI|FS349766 similar to UniRef100_A7Q0F7 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 692
Score = 482 bits (243), Expect = e-135
Identities = 273/283 (96%)
Strand = Plus / Minus
Query: 1056 tgaggcagatgaggcagttaatgcttccaaaaaagcaaagacggttcctcaaattgaaga 1115
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 692 tgaggcagatgaggcagttaatgcttccaaaaaagcaaaaacggttcctcaaattgaaga 633
Query: 1116 ggatgccctgataggctctactaagggtgacacttgcacccacttgaaagagattgaagc 1175
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 632 ggatgccctgataggctctactaagggtgacacttgcactcacttgaaagggattgaagc 573
Query: 1176 actgaatgaacaattgaagcaaaaagatttggagattgaatcgttgagggagcagttaag 1235
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cctgaatcaacaattgaagcaaaaagatttggagattgaatcgttgagggagcagttaag 513
Query: 1236 aaagagagattttgaagtctccaagctgcatataatgatatcctccttgaaaaagcgaac 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 512 aaagagagattttgaagtctccaagctgcatataatgatatcctccttgaaaaatcgaac 453
Query: 1296 agacaaaacaaggaacaaatttgctgttctccaggaggattga 1338
| |||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 452 aaacaaaacagggaacaaatttgctgctctctaggaggattga 410
>gnl|LJGI|FS323298 weakly similar to UniRef100_Q0J9I1 Cluster: Os04g0650600 protein;
n=1; Oryza sativa Japonica Group|Rep: Os04g0650600
protein - Oryza sativa subsp. japonica (Rice), partial
(12%)
Length = 697
Score = 254 bits (128), Expect = 1e-66
Identities = 155/164 (94%), Gaps = 5/164 (3%)
Strand = Plus / Plus
Query: 1 atgcggcatcattcaaatcaatactcggtagagaaactgaaagataaatctcatgtttca 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 534 atgcgacatcattcaaatcaatactcggtagagaaactgaaagataaatctcatgattca 593
Query: 61 cctgagcag-----gggctagtccaaataactctccagcacccattatatccattggatt 115
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 594 cctgagcagtacaggggctagtccaaataactctccaacacccattatatccattggatt 653
Query: 116 attcatttcaatcaattgatgagggatgggtaattataaacctc 159
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 654 attcatttcaatcaattgatgagagatgggtaattataaacctc 697