Miyakogusa Predicted Gene
- Lj1g3v4691700.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4691700.1 tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate binding
protein OS=Medicago truncatula GN=MTR_7g102730 PE=4
SV=,80.41,0,RRM_1,RNA recognition motif domain;
PABP,Polyadenylate-binding protein/Hyperplastic disc protein;
se,CUFF.32874.1
(1914 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75640 similar to UniRef100_A7QJ95 Cluster: Chromosome... 690 0.0
gnl|LJGI|TC79905 similar to UniRef100_A7QJ95 Cluster: Chromosome... 329 4e-89
gnl|LJGI|TC76607 similar to UniRef100_A4C9U3 Cluster: Cobalamin ... 82 1e-14
>gnl|LJGI|TC75640 similar to UniRef100_A7QJ95 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 719
Score = 690 bits (348), Expect = 0.0
Identities = 440/474 (92%), Gaps = 13/474 (2%)
Strand = Plus / Plus
Query: 199 atgcaagcaattgaggtgaagaatcattcaatgctgaatggaaaagtgataagggtcttg 258
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 255 atgcaagcaattgaggtgaagaatcattcaacgctgaatggaaaagtaataagggtcttg 314
Query: 259 tggtcgcgtcgtgatcctgatgttaggaaaagttgcattgggaacgtttttgtgaagaac 318
||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||
Sbjct: 315 tggtcgcgtcgtgatcctgatattaggaagaattgcattgggaacgtttttgttaagaac 374
Query: 319 ttggcagaatctgtggatagttctggactggaagaaatcttcaagaaatatgggaatatt 378
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 375 ttggcagaatcagtggatagtgctggactggaagaaatctttaagaaatatgggaatatt 434
Query: 379 ttgtccagcaaagttgtcatggctgatgatgggaagagcaaaggatatgggtttgttcaa 438
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tt---------agttgtcatggctgatgatgggaagagcaaaggatatgggtttgttcaa 485
Query: 439 tttgaatcagaggagtctgcaaatgctgccattgagaagctcaatggctctactatcaat 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttgaatcagaggagtctgcaaatgctgccattgagaagctcaatggctctactatcaat 545
Query: 499 gataagca----gatatatgttgggaggtttgtgnnnnnnngtgagcgcattttgcctgg 554
|||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 546 gataagcatatgcatatatgttgggaggtttgtgaaaaaaagtgagcgcattttgcctgg 605
Query: 555 ccctgatgccagttatactaatttgtacatgaagaatttggacctagatattacagaagc 614
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 606 ccctgatgccagatatactaatttgtacatgaagagtttagacctagatattacagaagc 665
Query: 615 acttctgaaggaaaagttttcctcttttgggaaaatcgttagcttggctatttc 668
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 666 acttctgaaggaaaagttttcctcttttgggaaaatcgttagcttgactatttc 719
>gnl|LJGI|TC79905 similar to UniRef100_A7QJ95 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 489
Score = 329 bits (166), Expect = 4e-89
Identities = 184/190 (96%)
Strand = Plus / Plus
Query: 875 agggatcaaacatttatgtgaagaacattgatgacaatgtaagcgatgaagaactgaggg 934
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 133 agggatcaaacatttatgtgaagaacattgatgacaatgtaagtgatgaagaactgcggg 192
Query: 935 accattttagtgcatgtggctctataacttctgcaaaagttatgaaagacgagaaaggga 994
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 193 gccattttagtgcatgtggctctataacttatgcaaaagttatgaaggacgagaaaggga 252
Query: 995 taagcaaagggtttggttttgtctgtttctctactcctgaggaggccaacaaagctgtga 1054
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taagccaagggtttggttttgtctgtttctctactcctgaggaggccaacaaagctgtga 312
Query: 1055 acacttttca 1064
||||||||||
Sbjct: 313 acacttttca 322
Score = 228 bits (115), Expect = 1e-58
Identities = 130/135 (96%)
Strand = Plus / Plus
Query: 636 ctcttttgggaaaatcgttagcttggctatttcaaaggatgagaatgggatgtcaaaggg 695
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 1 ctcttttgggaaaatcgttagcttgactatttcaaaggatgaaaatgggatgtcaaaggg 60
Query: 696 ctttggctttgtgaactatgaaaacccagatgatgctaaaagggccctggaagcgatgaa 755
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 61 ctttggctttgtgaactatgaaaactcagatgatgctaaaagggccttggaagcgatgaa 120
Query: 756 cggatcacaactagg 770
|||| ||||||||||
Sbjct: 121 cggaacacaactagg 135
>gnl|LJGI|TC76607 similar to UniRef100_A4C9U3 Cluster: Cobalamin synthase; n=1;
Pseudoalteromonas tunicata D2|Rep: Cobalamin synthase -
Pseudoalteromonas tunicata D2, partial (7%)
Length = 943
Score = 81.8 bits (41), Expect = 1e-14
Identities = 90/105 (85%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 767 taggttcaaagattctgtatgta-gccagggcacagaagaaggctgagcgtgagcggatc 825
|||||||||||||| |||||||| | |||||||| ||| | | ||| || ||||||||
Sbjct: 400 taggttcaaagattttgtatgtatgaaagggcacaaaagtatggagagtgtaagcggatc 459
Query: 826 ttgaaccatcaatttgaggagaaaagaaaggaacaaatcttgaaa 870
||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct: 460 ttgaaccattgatttgaggagaaatgaaaggatcaaatcttgaaa 504