Miyakogusa Predicted Gene
- Lj1g3v4680330.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4680330.1 tr|A9RAU8|A9RAU8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_63656
,33.81,8e-17,Tudor/PWWP/MBT,NULL; PWWP,PWWP; no description,NULL;
seg,NULL,CUFF.33000.1
(969 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW627669 similar to UniRef100_Q89NY8 Cluster: FlaA prot... 674 0.0
gnl|LJGI|AV416758 similar to UniRef100_A7QJC9 Cluster: Chromosom... 555 e-157
gnl|LJGI|TC80772 similar to UniRef100_O82341 Cluster: Eukaryotic... 176 2e-43
gnl|LJGI|TC82414 similar to UniRef100_A7QJC9 Cluster: Chromosome... 125 5e-28
gnl|LJGI|TC57915 similar to UniRef100_A9BDW2 Cluster: Na+/melibi... 125 5e-28
gnl|LJGI|FS349582 60 3e-08
>gnl|LJGI|BW627669 similar to UniRef100_Q89NY8 Cluster: FlaA protein; n=1;
Bradyrhizobium japonicum|Rep: FlaA protein -
Bradyrhizobium japonicum, partial (9%)
Length = 432
Score = 674 bits (340), Expect = 0.0
Identities = 346/348 (99%)
Strand = Plus / Plus
Query: 13 atggccaagaagatgaatgcccagatggttgattgtatgcccaagcattctcaacaaccc 72
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atggccaagaagaggaatgcccagatggttgattgtatgcccaagcattctcaacaaccc 144
Query: 73 agaagctctcctcctcccaaacgccgcactgatttctccgtcttcgcctccacccctcat 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agaagctctcctcctcccaaacgccgcactgatttctccgtcttcgcctccacccctcat 204
Query: 133 cctgattcctcgccaggttcatcttctggtgagataagattgtctagtgtcactgcaagc 192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 cctgattcctcgccaggttcatcttctggtgagataacattgtctagtgtcactgcaagc 264
Query: 193 agtttgcaggagaggacatcaacagggaatctattttctgatgatacgttggttcgatgc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttgcaggagaggacatcaacagggaatctattttctgatgatacgttggttcgatgc 324
Query: 253 agtaattaccaacacggtaaaccagtgtgttcatctgaatcttctgatgttccagctgtg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaattaccaacacggtaaaccagtgtgttcatctgaatcttctgatgttccagctgtg 384
Query: 313 gaagttgattcagtggtaaaagatgaaggtctcgaccacagtgtaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagttgattcagtggtaaaagatgaaggtctcgaccacagtgtaaat 432
>gnl|LJGI|AV416758 similar to UniRef100_A7QJC9 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 284
Score = 555 bits (280), Expect = e-157
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 357 aaatagggattcttgtgatgaaaaaattgatattttcaagactttagaatctacccctcg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatagggattcttgtgatgaaaaaattgatattttcaagactttagaatctacccctcg 60
Query: 417 cgactcatctgacagtgatagcagttcccttgctgtaacccctggaagtgtcgtgtgggc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgactcatctgacagtgatagcagttcccttgctgtaacccctggaagtgtcgtgtgggc 120
Query: 477 aagaacagctggtgaaatctggtggcctgctgagatcatggaagaaagacctgcattatc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaacagctggtgaaatctggtggcctgctgagatcatggaagaaagacctgcattatc 180
Query: 537 tgaccctgtcagtgatggacatgttttagtgcagttttatggaaataatcccagtgcttg 596
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 tgaccctgtcagtgatggacatgttttagtgcacttttatggaaataatcccagtgcttg 240
Query: 597 ggttgatccagtcacagatatttcaacctttgaggattcttttg 640
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggttgatccagtcacagatatttcaacctttgaggattcttttg 284
>gnl|LJGI|TC80772 similar to UniRef100_O82341 Cluster: Eukaryotic translation
initiation factor 3 delta subunit; n=2; Arabidopsis
thaliana|Rep: Eukaryotic translation initiation factor 3
delta subunit - Arabidopsis thaliana (Mouse-ear cress),
partial (15%)
Length = 790
Score = 176 bits (89), Expect = 2e-43
Identities = 118/126 (93%), Gaps = 5/126 (3%)
Strand = Plus / Plus
Query: 509 agatcatggaagaaagacctgcattatctgaccctgtcagtgatggacatgttttagtgc 568
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 459 agatcatggaagaaagacctgcattatctgaccctgccagtgatggacatgttttagtgc 518
Query: 569 agttttatggaaataatcccagtgcttgggttgatc-cagtcacagatatttcaaccttt 627
||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct: 519 agttttatggaaataat----gtgcttggattgatcaaagtcacagatatttcaaccttt 574
Query: 628 gaggat 633
||||||
Sbjct: 575 gaggat 580
>gnl|LJGI|TC82414 similar to UniRef100_A7QJC9 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 490
Score = 125 bits (63), Expect = 5e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 904 gctcggcggttaaagataatgcggtatctcggccttgctcctcctgttggttctcctttt 963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gctcggcggttaaagataatgcggtatctcgnccttgctcctcctgttggttctcctttt 60
Query: 964 tgatcg 969
||||||
Sbjct: 61 tgatcg 66
>gnl|LJGI|TC57915 similar to UniRef100_A9BDW2 Cluster: Na+/melibiose symporter; n=1;
Prochlorococcus marinus str. MIT 9211|Rep: Na+/melibiose
symporter - Prochlorococcus marinus str. MIT 9211,
partial (5%)
Length = 826
Score = 125 bits (63), Expect = 5e-28
Identities = 69/71 (97%)
Strand = Plus / Minus
Query: 785 gcacttcagctagctcaagcagaacagttgatgatcaagagagacgaagagggcaaagga 844
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 231 gcacttcagctagttcaagcagaacaattgatgatcaagagagacgaagagggcaaagga 172
Query: 845 aacgtaaaccc 855
|||||||||||
Sbjct: 171 aacgtaaaccc 161
>gnl|LJGI|FS349582
Length = 737
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 557 atgttttagtgcagttttatggaaataatcccag 590
|||||||||||||||||||||||||| |||||||
Sbjct: 202 atgttttagtgcagttttatggaaatcatcccag 169
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 608 tcacagatatttcaacctttgaggat 633
||||||||||||||||||||||||||
Sbjct: 81 tcacagatatttcaacctttgaggat 56