Miyakogusa Predicted Gene

Lj1g3v4615480.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4615480.1 Non Chatacterized Hit- tr|F6HC00|F6HC00_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,30.39,2.8,seg,NULL,CUFF.32802.1
         (369 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73433 weakly similar to UniRef100_A4TTL5 Cluster: Mem...   591   e-168
gnl|LJGI|BP045331 similar to UniRef100_A9U3H0 Cluster: SM/Sec1-f...    68   4e-11

>gnl|LJGI|TC73433 weakly similar to UniRef100_A4TTL5 Cluster: Membrane protein; n=1;
           Magnetospirillum gryphiswaldense|Rep: Membrane protein -
           Magnetospirillum gryphiswaldense, partial (8%)
          Length = 631

 Score =  591 bits (298), Expect = e-168
 Identities = 301/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacatgaggttcagagcgccgaactcgcagcgagttcggcggagacattgttcatgt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 458 atgaacatgaggttcagagcgccgaactcgcagcgagttcgacggagacattgttcatgt 399

                                                                       
Query: 61  ggcggtggagacaaatctgggaagagaaattgtgtttcggttctgttttttggaatgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggcggtggagacaaatctgggaagagaaattgtgtttcggttctgttttttggaatgggc 339

                                                                       
Query: 121 tctggttctggagaaggctgtgggtgttgtgatggggatgaagatgggaacgaagatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctggttctggagaaggctgtgggtgttgtgatggggatgaagatgggaacgaagatgca 279

                                                                       
Query: 181 tctcgatctcacccaaatctgtctatttcttcaaacagatctaaggacttcaacctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctcgatctcacccaaatctgtctatttcttcaaacagatctaaggacttcaacctcctc 219

                                                                       
Query: 241 caatccttctcctctgatctaaagggttctgttgtggttaggtttggggttgggttggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 caatccttctcctctgatctaaagggttctgttgtggttaggtttggggttgggttggac 159

             
Query: 301 tt 302
           ||
Sbjct: 158 tt 157


>gnl|LJGI|BP045331 similar to UniRef100_A9U3H0 Cluster: SM/Sec1-family protein; n=1;
           Physcomitrella patens subsp. patens|Rep: SM/Sec1-family,
           partial (2%)
          Length = 477

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 156 ggatgaagatgggaacgaagatgcatctcgatctcacccaaatctgtctatttcttca 213
           |||||||||||||||||| || |||||| ||||||||||| ||  |||||||||||||
Sbjct: 477 ggatgaagatgggaacgacgaggcatcttgatctcacccagattggtctatttcttca 420



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 268 tctgttgtggttaggtttggggttgggttg 297
           ||||||||||||||| ||||||||||||||
Sbjct: 415 tctgttgtggttaggcttggggttgggttg 386