Miyakogusa Predicted Gene

Lj1g3v4579180.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4579180.1 Non Chatacterized Hit- tr|B6T001|B6T001_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,29.8,0.000003,seg,NULL,CUFF.32721.1
         (940 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP040410 weakly similar to UniRef100_A7PT04 Cluster: Ch...   712   0.0  
gnl|LJGI|BW608831 similar to UniRef100_A7PT04 Cluster: Chromosom...    62   7e-09

>gnl|LJGI|BP040410 weakly similar to UniRef100_A7PT04 Cluster: Chromosome chr8
           scaffold_29, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (10%)
          Length = 486

 Score =  712 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Minus

                                                                       
Query: 582 agaaacagagtccacctccggcgacacttccggtgacaacgataacaaaccggtttcagt 641
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaaacagagtccacctccggcgacacttccggtgacaacgataacaaaccggtttcagt 427

                                                                       
Query: 642 gaggcattcagtttcggaatcagaagccaaaagggtatcagaatctgaaacaaaaatgga 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaggcattcagtttcggaatcagaagccaaaagggtatcagaatctgaaacaaaaatgga 367

                                                                       
Query: 702 gtttttcaaagagcttgaggattcgcttctgagacagggaatcacagcttcaatcaccaa 761
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtttttcaaagagcttgaggattcgcttctgagacagggaatcacagcttcaatcaccaa 307

                                                                       
Query: 762 caactcagagggaaactctgcatcacgttctcctgtagtgcttacaaggtgcaaatcgga 821
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 caactcagagggaaactctgcatcacgttctcctgtagtgcttacaaggtgcaaatcgga 247

                                                                       
Query: 822 accggctaacagagggcttaggattgatcctgaggtgaacaatttgtggaaaaagagaag 881
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 accggctaacagagggcttaggattgatcctgaggtgaacaatttgtggaaaaagagaag 187

                                                                      
Query: 882 gttgggttttgctactgagacatgctctgttcttcatcatcacatggtttctgattagg 940
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gttgggttttgctactgagacatgctctgttcttcatcatcacatggtttctgattagg 128


>gnl|LJGI|BW608831 similar to UniRef100_A7PT04 Cluster: Chromosome chr8 scaffold_29,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_29, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 475

 Score = 61.9 bits (31), Expect = 7e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 491 ccaccccaccgagaaacgctttgctgttaacaagatgcagatc 533
           |||| |||||||||||||||||| ||||||| |||||||||||
Sbjct: 418 ccacgccaccgagaaacgctttgttgttaacgagatgcagatc 376