Miyakogusa Predicted Gene
- Lj1g3v4578800.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4578800.1 Non Chatacterized Hit- tr|F6HHA9|F6HHA9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,69.65,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
Ribonuclease H-like,Ribonuclease H-like domain; C2H2,CUFF.32685.1
(3621 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO006510 similar to UniRef100_A7PF89 Cluster: Chromosom... 1277 0.0
gnl|LJGI|TC73574 similar to UniRef100_A7PF89 Cluster: Chromosome... 632 e-180
gnl|LJGI|TC61800 similar to UniRef100_A7PF89 Cluster: Chromosome... 432 e-120
gnl|LJGI|BP063043 weakly similar to UniRef100_A7PF89 Cluster: Ch... 343 5e-93
gnl|LJGI|TC66691 similar to UniRef100_A7PF89 Cluster: Chromosome... 287 2e-76
gnl|LJGI|AV408976 weakly similar to UniRef100_A7PF89 Cluster: Ch... 214 3e-54
gnl|LJGI|BP043175 60 1e-07
>gnl|LJGI|GO006510 similar to UniRef100_A7PF89 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 656
Score = 1277 bits (644), Expect = 0.0
Identities = 653/656 (99%)
Strand = Plus / Plus
Query: 2603 gggatagtgtgaaatatgtgaagacttcatatatacatgaggacaaattcctggaactca 2662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggatagtgtgaaatatgtgaagacttcatatatacatgaggacaaattcctggaactca 60
Query: 2663 aacagcaacttcaggtccccagtgaaagaagcctttttattgatgacctaaccaaatgga 2722
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacagcaacctcaggtccccagtgaaagaagcctttttattgatgacctaaccaaatgga 120
Query: 2723 atacaacatatgaaatgctggttgcagcttctgaactaaaggaagtgttttcttgtttgg 2782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacaacatatgaaatgctggttgcagcttctgaactaaaggaagtgttttcttgtttgg 180
Query: 2783 acacgtatgatcctgattacaaaggagccccatctattcaagattggaagcttgttgaga 2842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacgtatgatcctgattacaaaggagccccatctattcaagattggaagcttgttgaga 240
Query: 2843 ccctctgcacatacttgaagcccctttttgatgcagccaacattcttctcacgacaactc 2902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccctctgcacatacttgaagcccctttttgatgcagccaacattcttctcacgacaactc 300
Query: 2903 atccagctattattacctgctttcatgaagtttggaaaatgcagttggatctggctcgtg 2962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atccagctattattacctgctttcatgaagtttggaaaatgcagttggatctggctcgtg 360
Query: 2963 ctgctatgaatgaggatccattcattagcaacctaactaaacctatgcaggaaaggattg 3022
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgctatgaatgaggattcattcattagcaacctaactaaacctatgcaggaaaggattg 420
Query: 3023 gtaagtactggagagattgtagtctgattttggctactgctgtagttatggatcctcgtt 3082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtaagtactggagagattgtagtctgattttggctactgctgtagttatggatcctcgtt 480
Query: 3083 tcaagatgaagcttgttgagttcagtttcacaaaaatatatggcaaggatgcccatgtgc 3142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcaagatgaagcttgttgagttcagtttcacaaaaatatatggcaaggatgcccatgtgc 540
Query: 3143 atgtcaagattgtcaatgacggaattcatgagctgtttcacgagtatgttaactatcctc 3202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgtcaagattgtcaatgacggaattcatgagctgtttcacgagtatgttaactatcctc 600
Query: 3203 tgccactcacagcagcatatgcagaaggagatgctggaagcctcattggggaatcc 3258
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 601 tgccactcacagcagcatatgcagaacgagatgctggaagcctcattggggaatcc 656
>gnl|LJGI|TC73574 similar to UniRef100_A7PF89 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 524
Score = 632 bits (319), Expect = e-180
Identities = 331/335 (98%)
Strand = Plus / Plus
Query: 3287 gccttactgattttgatgcctatatcatggaaactagtagccaacagatgaagtctgaat 3346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccttactgattttgatgcctatatcatggaaactagtagccaacagatgaagtctgaat 60
Query: 3347 tggaccagtatttggaggaatcattgttgccacgtgttccggactttgatgtattaggtt 3406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaccagtatttggaggaatcattgttgccacgtgttccggactttgatgtattaggtt 120
Query: 3407 ggtggaagataaacaaagtcaagtaccctactctttccaagatggcccgggacatattgt 3466
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 ggtggaagataaaccaagtcaagtaccctactctttcccagatggcccgggacatattgt 180
Query: 3467 ctataccagtttctactgttccttctgaatctttctttgataggaaaagcaaagaaatgg 3526
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ctataccagtttctactgttccttctgaatctttctttgataggaaaagccaagaaatgg 240
Query: 3527 atcagtatcgatcttccttgcgaccagaggcggtggaggcccttgtatgtaccaaagact 3586
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 atcagtatcgatcttccttgcgaccagaggcggtggaggcccttgtatgtacccaagact 300
Query: 3587 ggatgcagtatatagcagctgaaatgggcatgtga 3621
|||||||||||||||||||||||||||||||||||
Sbjct: 301 ggatgcagtatatagcagctgaaatgggcatgtga 335
>gnl|LJGI|TC61800 similar to UniRef100_A7PF89 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 1014
Score = 432 bits (218), Expect = e-120
Identities = 377/430 (87%)
Strand = Plus / Plus
Query: 2761 aaggaagtgttttcttgtttggacacgtatgatcctgattacaaaggagccccatctatt 2820
|||||||| || |||||||||||||| | ||||||||||||||| |||||||| |||||
Sbjct: 2 aaggaagtattctcttgtttggacacttctgatcctgattacaagggagccccgtctatg 61
Query: 2821 caagattggaagcttgttgagaccctctgcacatacttgaagcccctttttgatgcagcc 2880
||||| |||||||| ||||||| ||||||||| |||||||||||||||| |||||| ||
Sbjct: 62 caagactggaagctggttgagagcctctgcacgtacttgaagcccctttatgatgctgca 121
Query: 2881 aacattcttctcacgacaactcatccagctattattacctgctttcatgaagtttggaaa 2940
|||||||| | ||||||||||||| || |||||||| |||||||||||| ||||||
Sbjct: 122 aacattctgaccccgacaactcatcctactgctattaccttctttcatgaagtctggaaa 181
Query: 2941 atgcagttggatctggctcgtgctgctatgaatgaggatccattcattagcaacctaact 3000
||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||| |||
Sbjct: 182 ttgcagttggatatgtctcgtgctgttatgaatgaggatcccttcattggcaaccttact 241
Query: 3001 aaacctatgcaggaaaggattggtaagtactggagagattgtagtctgattttggctact 3060
||||| ||||| |||| ||||| ||||||||||||||||||| |||||||||||| |
Sbjct: 242 aaacccatgcaagaaaagattgacaagtactggagagattgtaatctgattttggcactt 301
Query: 3061 gctgtagttatggatcctcgtttcaagatgaagcttgttgagttcagtttcacaaaaata 3120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctgtagtcatggatcctcgtttcaagatgaagcttgttgagttcagtttcacaaaaatc 361
Query: 3121 tatggcaaggatgcccatgtgcatgtcaagattgtcaatgacggaattcatgagctgttt 3180
|||||| | | ||| |||| ||||||||||||| |||| ||||||||||||||||||
Sbjct: 362 tatggcgatggtgctcatgaatatgtcaagattgttgatgagggaattcatgagctgttt 421
Query: 3181 cacgagtatg 3190
|| |||||||
Sbjct: 422 catgagtatg 431
Score = 287 bits (145), Expect = 2e-76
Identities = 298/349 (85%)
Strand = Plus / Plus
Query: 3261 aggaggaactctgacgacagataatggccttactgattttgatgcctatatcatggaaac 3320
||||||||| ||| | ||||| |||| || || |||||||||| ||| |||||||||||
Sbjct: 502 aggaggaacgctgctgtcagatcatggactaacagattttgatgtctacatcatggaaac 561
Query: 3321 tagtagccaacagatgaagtctgaattggaccagtatttggaggaatcattgttgccacg 3380
| ||||||||||||||||| ||| |||||||||||| |||| |||||| | ||||| ||
Sbjct: 562 ttctagccaacagatgaagtgtgagttggaccagtatctggaagaatcacttttgccgcg 621
Query: 3381 tgttccggactttgatgtattaggttggtggaagataaacaaagtcaagtaccctactct 3440
|||| |||||||||| |||||||||||||||||| | ||||| |||||||||| |||||
Sbjct: 622 tgtttcggactttgacgtattaggttggtggaagcttaacaagatcaagtaccccactct 681
Query: 3441 ttccaagatggcccgggacatattgtctataccagtttctactgttccttctgaatcttt 3500
||||||||||||||| || |||||| || | |||||||| | ||||||| |||| ||| |
Sbjct: 682 ttccaagatggcccgagatatattggctgttccagtttcaagtgttcctgctgactctgt 741
Query: 3501 ctttgataggaaaagcaaagaaatggatcagtatcgatcttccttgcgaccagaggcggt 3560
||||| | || |||||||| |||||||||||| || ||||||||| |||||| | ||
Sbjct: 742 atttgacacaaagagcaaagagatggatcagtatagaagttccttgcgcccagagacagt 801
Query: 3561 ggaggcccttgtatgtaccaaagactggatgcagtatatagcagctgaa 3609
|||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 802 ggaggcccttgtatgtgccaaagactggatgcagtatggagcagctgaa 850
>gnl|LJGI|BP063043 weakly similar to UniRef100_A7PF89 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 510
Score = 343 bits (173), Expect = 5e-93
Identities = 184/189 (97%)
Strand = Plus / Minus
Query: 3433 cctactctttccaagatggcccgggacatattgtctataccagtttctactgttccttct 3492
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 510 cctactctttccaagatgncccggcacatattgtctataccagtttctactgttccttct 451
Query: 3493 gaatctttctttgataggaaaagcaaagaaatggatcagtatcgatcttccttgcgacca 3552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 450 gaatctttctttgataggaaaagcnaagaaatggatcagtatcgatcttccttgcgacca 391
Query: 3553 gaggcggtggaggcccttgtatgtaccaaagactggatgcagtatatagcagctgaaatg 3612
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 gagncggtggaggcccttgtatgtaccaaagactggatncagtatatagcagctgaaatg 331
Query: 3613 ggcatgtga 3621
|||||||||
Sbjct: 330 ggcatgtga 322
>gnl|LJGI|TC66691 similar to UniRef100_A7PF89 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 617
Score = 287 bits (145), Expect = 2e-76
Identities = 298/349 (85%)
Strand = Plus / Plus
Query: 3261 aggaggaactctgacgacagataatggccttactgattttgatgcctatatcatggaaac 3320
||||||||| ||| | ||||| |||| || || |||||||||| ||| |||||||||||
Sbjct: 51 aggaggaacgctgctgtcagatcatggactaacagattttgatgtctacatcatggaaac 110
Query: 3321 tagtagccaacagatgaagtctgaattggaccagtatttggaggaatcattgttgccacg 3380
| ||||||||||||||||| ||| |||||||||||| |||| |||||| | ||||| ||
Sbjct: 111 ttctagccaacagatgaagtgtgagttggaccagtatctggaagaatcacttttgccgcg 170
Query: 3381 tgttccggactttgatgtattaggttggtggaagataaacaaagtcaagtaccctactct 3440
|||| |||||||||| |||||||||||||||||| | ||||| |||||||||| |||||
Sbjct: 171 tgtttcggactttgacgtattaggttggtggaagcttaacaagatcaagtaccccactct 230
Query: 3441 ttccaagatggcccgggacatattgtctataccagtttctactgttccttctgaatcttt 3500
||||||||||||||| || |||||| || | |||||||| | ||||||| |||| ||| |
Sbjct: 231 ttccaagatggcccgagatatattggctgttccagtttcaagtgttcctgctgactctgt 290
Query: 3501 ctttgataggaaaagcaaagaaatggatcagtatcgatcttccttgcgaccagaggcggt 3560
||||| | || |||||||| |||||||||||| || ||||||||| |||||| | ||
Sbjct: 291 atttgacacaaagagcaaagagatggatcagtatagaagttccttgcgcccagagacagt 350
Query: 3561 ggaggcccttgtatgtaccaaagactggatgcagtatatagcagctgaa 3609
|||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 351 ggaggcccttgtatgtgccaaagactggatgcagtatggagcagctgaa 399
>gnl|LJGI|AV408976 weakly similar to UniRef100_A7PF89 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 340
Score = 214 bits (108), Expect = 3e-54
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 2323 ctcaatgttgtgatggaaccataccctgattctgacacagctatcagccatgctgttgct 2382
|||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 8 ctcaatgtcgtgatggaaccataccctgattctgactctgctatcagccatgctgtagcg 67
Query: 2383 gcttgcattatggactggaatctgcagggcaggatgttttctatcacttgtaatcaggca 2442
| |||| || || ||||| | ||||| || | |||||||| ||||||||||| |||
Sbjct: 68 gtttgcctttctgattggaacattgagggccggctattttctattacttgtaatcatgca 127
Query: 2443 ctgactgaggtttctcttgaaaatctcagacccttgctctctgtgaagaatccacttatc 2502
|||| ||| | | |||| ||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 128 ctgagtgaaagtgcccttgggaatctcagatccttactctcagtgaaaaatccacttatc 187
Query: 2503 ctcaatggtcagttgctaattggaaattgcattgcccgtactttaagcaatgttgcaaat 2562
|||||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 188 ctcaatggccagttgctagttggacattgcattgcccgtactttgagcaatgttgcaaat 247
Query: 2563 gatttgttgagc 2574
||||||||||||
Sbjct: 248 gatttgttgagc 259
>gnl|LJGI|BP043175
Length = 548
Score = 60.0 bits (30), Expect = 1e-07
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 778 gtggttgtatctgaaacacagcaaaacaatgaggtgattgtatgtgaaacacag 831
|||||||||||||||||||||||| |||||||||| || ||| |||||||||
Sbjct: 308 gtggttgtatctgaaacacagcaaggcaatgaggtggttttatcggaaacacag 361
Score = 58.0 bits (29), Expect = 4e-07
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 804 caatgaggtgattgtatgtgaaacacagcacgacaatgagatggttgtatctgaaacaca 863
|||||| ||| |||||| |||||||||||| | ||||||| ||||| |||| ||||||||
Sbjct: 301 caatgatgtggttgtatctgaaacacagcaaggcaatgaggtggttttatcggaaacaca 360
Query: 864 g 864
|
Sbjct: 361 g 361
Score = 58.0 bits (29), Expect = 4e-07
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 845 tggttgtatctgaaacacagcaaaacaatgaggtgattgtatgtgaaacacag 897
||||||||||||||||||||||| |||||||||| || ||| |||||||||
Sbjct: 309 tggttgtatctgaaacacagcaaggcaatgaggtggttttatcggaaacacag 361
Score = 58.0 bits (29), Expect = 4e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 683 ttgtatctgaaacacagcacagcaatgaggtggctgtatctgaaacaca 731
||||||||||||||||||| |||||||||||| | |||| ||||||||
Sbjct: 312 ttgtatctgaaacacagcaaggcaatgaggtggttttatcggaaacaca 360