Miyakogusa Predicted Gene
- Lj1g3v4578720.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4578720.1 tr|I0YSF8|I0YSF8_9CHLO Alternative oxidase
OS=Coccomyxa subellipsoidea C-169 PE=3
SV=1,26.61,0.00000001,seg,NULL,CUFF.32676.1
(648 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70837 similar to UniRef100_Q10N48 Cluster: Expressed ... 1285 0.0
gnl|LJGI|TC66063 weakly similar to UniRef100_Q10N48 Cluster: Exp... 94 1e-18
>gnl|LJGI|TC70837 similar to UniRef100_Q10N48 Cluster: Expressed protein; n=1; Oryza
sativa Japonica Group|Rep: Expressed protein - Oryza
sativa subsp. japonica (Rice), partial (62%)
Length = 975
Score = 1285 bits (648), Expect = 0.0
Identities = 648/648 (100%)
Strand = Plus / Plus
Query: 1 atgtccgcgtcgatttctagggtttcacgcctcatcctcctcatcctctccatattctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgtccgcgtcgatttctagggtttcacgcctcatcctcctcatcctctccatattctca 216
Query: 61 ttcaccaattctccaggtttggtgttatctgcagtggtcacgctgagttcccttgagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttcaccaattctccaggtttggtgttatctgcagtggtcacgctgagttcccttgagata 276
Query: 121 tttacaacgcatgagtggctaagagctactccatctgtctattttcgatgcactggggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttacaacgcatgagtggctaagagctactccatctgtctattttcgatgcactggggac 336
Query: 181 aataaaaccgtgttgcctgatattaagaaaccccatgttttgtatactttcaagggtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aataaaaccgtgttgcctgatattaagaaaccccatgttttgtatactttcaagggtgaa 396
Query: 241 gagtcttggcagcctttgactgacttccctagtaaaaagtgcaagcgatgtggattgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagtcttggcagcctttgactgacttccctagtaaaaagtgcaagcgatgtggattgtat 456
Query: 301 gagaaagaccccattctttcagatgatgtgtttgatgagtgggagctgtgtccttctgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gagaaagaccccattctttcagatgatgtgtttgatgagtgggagctgtgtccttctgat 516
Query: 361 tttgccgcccctgatggaaaatacagcctcttcaaggagaaagaatttaatgctactttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttgccgcccctgatggaaaatacagcctcttcaaggagaaagaatttaatgctactttc 576
Query: 421 ctctgcccagagtgcttaactcttcctggtgttgctgtccctgcgcctgaagggaatcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctctgcccagagtgcttaactcttcctggtgttgctgtccctgcgcctgaagggaatcgt 636
Query: 481 gataaaaaaggaatgaatgtagctcttgtaatcttgctggttgttttggtctcagctata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gataaaaaaggaatgaatgtagctcttgtaatcttgctggttgttttggtctcagctata 696
Query: 541 ctgatcctggcaatgatgggtgcatataagtactggcaaaagaagaagagagagcaagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgatcctggcaatgatgggtgcatataagtactggcaaaagaagaagagagagcaagat 756
Query: 601 caagctcggtttttgaagttatttgaagaaggagatgaccttgaggat 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caagctcggtttttgaagttatttgaagaaggagatgaccttgaggat 804
>gnl|LJGI|TC66063 weakly similar to UniRef100_Q10N48 Cluster: Expressed protein; n=1;
Oryza sativa Japonica Group|Rep: Expressed protein -
Oryza sativa subsp. japonica (Rice), partial (53%)
Length = 771
Score = 93.7 bits (47), Expect = 1e-18
Identities = 149/183 (81%)
Strand = Plus / Plus
Query: 271 agtaaaaagtgcaagcgatgtggattgtatgagaaagaccccattctttcagatgatgtg 330
||||||||||||||||| |||||| | |||||| ||||| |||| ||||||||||||
Sbjct: 305 agtaaaaagtgcaagcggtgtggactctatgaggaagacagcattacttcagatgatgta 364
Query: 331 tttgatgagtgggagctgtgtccttctgattttgccgcccctgatggaaaatacagcctc 390
||||| || |||||| | ||||||||||||||| | | |||||||| |||| | |
Sbjct: 365 tttgaagaatgggagttttgtccttctgattttactggacctgatggtgaatataacagg 424
Query: 391 ttcaaggagaaagaatttaatgctactttcctctgcccagagtgcttaactcttcctggt 450
|||||||| || ||||| ||||| ||||| || |||| |||||||||| | ||| |||||
Sbjct: 425 ttcaaggaaaaggaattcaatgccacttttctgtgccaagagtgcttatcgcttgctggt 484
Query: 451 gtt 453
|||
Sbjct: 485 gtt 487
Score = 69.9 bits (35), Expect = 2e-11
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 554 tgatgggtgcatataagtactggcaaaagaagaagagagagcaagatcaagctcggtttt 613
|||||||||||||||| | ||||| |||||||| || || ||||| || ||||| |||
Sbjct: 573 tgatgggtgcatataaattctggctaaagaagataagggaacaagaccagactcggcttt 632
Query: 614 tgaagttatttgaagaaggagat 636
|||||||||||||||| ||||||
Sbjct: 633 tgaagttatttgaagatggagat 655