Miyakogusa Predicted Gene

Lj1g3v4578340.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4578340.1 Non Chatacterized Hit- tr|Q949M4|Q949M4_ARATH
Putative uncharacterized protein At4g28760
OS=Arabidop,29.41,4e-18,DUF4378,Domain of unknown function DUF4378;
DUF3741,Protein of unknown function DUF3741; VARLMGL,NUL,CUFF.32656.1
         (2733 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63149 weakly similar to UniRef100_A7PSX1 Cluster: Chr...   101   2e-20
gnl|LJGI|TC82246 weakly similar to UniRef100_A7Q441 Cluster: Chr...    70   8e-11

>gnl|LJGI|TC63149 weakly similar to UniRef100_A7PSX1 Cluster: Chromosome chr8
            scaffold_29, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr8 scaffold_29, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 1241

 Score =  101 bits (51), Expect = 2e-20
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                        
Query: 2240 ttttggaagtttggcgttctctggaatgctctctgagtctttcagtgtttgatgaactag 2299
            ||||||||||||||  ||| || |||||| |  ||||  ||||||||||| ||||||| |
Sbjct: 623  ttttggaagtttggaattccctagaatgccccatgagcatttcagtgtttcatgaacttg 682

                                                                        
Query: 2300 aaatgaggtactctgattggaccatttgctcaatgtctgaaaggagattgctttttgacc 2359
            ||| |||||||| ||||||||||| ||| |||| ||||||||||||| ||||||| ||||
Sbjct: 683  aaaagaggtactgtgattggaccacttgttcaaggtctgaaaggagaatgcttttcgacc 742

                   
Query: 2360 gtataaa 2366
            | |||||
Sbjct: 743  gcataaa 749


>gnl|LJGI|TC82246 weakly similar to UniRef100_A7Q441 Cluster: Chromosome chr13
           scaffold_48, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr13 scaffold_48, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (3%)
          Length = 519

 Score = 69.9 bits (35), Expect = 8e-11
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 11  aaactgattccaaaagaagagcccctggtgttgttgccagactaatgggtcttga 65
           ||||||| |||||||||||| ||||||||||| |||||||| | |||||||||||
Sbjct: 364 aaactgaatccaaaagaagatcccctggtgttattgccagattgatgggtcttga 418