Miyakogusa Predicted Gene

Lj1g3v4565150.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4565150.1 Non Chatacterized Hit- tr|K4ATA8|K4ATA8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.91,0.2,seg,NULL,CUFF.32647.1
         (171 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61652                                                      115   9e-26
gnl|LJGI|TC74285 similar to UniRef100_O82314 Cluster: UPF0082 pr...    76   7e-14
gnl|LJGI|TC76195 similar to UniRef100_Q941D6 Cluster: Histone de...    64   3e-10
gnl|LJGI|TC80083                                                       50   4e-06

>gnl|LJGI|TC61652 
          Length = 768

 Score =  115 bits (58), Expect = 9e-26
 Identities = 91/103 (88%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                       
Query: 70  agccattctgtatacgagatggtctgcggttttaccnnnnnnn-cctattctgtatcggt 128
           |||||||||||||||||||| | |||||||||||||        |||||||||||| |||
Sbjct: 232 agccattctgtatacgagattgcctgcggttttaccttttttttcctattctgtattggt 291

                                                      
Query: 129 gacatgccggtctagatgttgcagaagaacaattgtttgatga 171
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 292 gacatgctggtctagatgttgcagaagaacaattgtttgatga 334


>gnl|LJGI|TC74285 similar to UniRef100_O82314 Cluster: UPF0082 protein At2g25830;
           n=1; Arabidopsis thaliana|Rep: UPF0082 protein At2g25830
           - Arabidopsis thaliana (Mouse-ear cress), partial (9%)
          Length = 576

 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 1   atggatcaagctatggagaaaggccttattttcattgacggttttggacc 50
           |||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 111 atggatcaagctatggagaatggccttattttcattgatggttctggacc 160


>gnl|LJGI|TC76195 similar to UniRef100_Q941D6 Cluster: Histone deacetylase 14; n=1;
           Arabidopsis thaliana|Rep: Histone deacetylase 14 -
           Arabidopsis thaliana (Mouse-ear cress), partial (36%)
          Length = 626

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 1   atggatcaagctatggagaaaggccttattttcattgacggttttggaccaa 52
           |||||||||||||||||||| || |||||||| ||||| |||| ||||||||
Sbjct: 425 atggatcaagctatggagaagggacttattttaattgagggttctggaccaa 476


>gnl|LJGI|TC80083 
          Length = 1107

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 12  tatggagaaaggccttattttcattgacggttttggaccaa 52
           ||||||||| ||||||||||||||| | ||||||| |||||
Sbjct: 200 tatggagaagggccttattttcatttaaggttttgaaccaa 240