Miyakogusa Predicted Gene

Lj1g3v4554590.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4554590.1 tr|I0EXB9|I0EXB9_HELPX Toxin-like outer membrane
protein/vacuolating cytotoxin VacA OS=Helicobacter
,21.9,0.3,seg,NULL,gene.g36779.t1.1
         (384 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV778144                                                     238   2e-62

>gnl|LJGI|AV778144 
          Length = 520

 Score =  238 bits (120), Expect = 2e-62
 Identities = 132/136 (97%)
 Strand = Plus / Minus

                                                                       
Query: 249 aggaggtgccctcaataatctaacaacccgtattgattttgttgagcttgttcagaaagc 308
           ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 520 aggaggtgccctcgatcatctaaccacccgtattgattttgttgagcttgttcagaaagc 461

                                                                       
Query: 309 actaaaggggaaaacgaaattaagtaaagataagcttgaagagttttcctacgaatttct 368
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actcaaggggaaaacgaaattaagtaaagataagcttgaagagttttcctacgaatttct 401

                           
Query: 369 ggataggtgttcttag 384
           ||||||||||||||||
Sbjct: 400 ggataggtgttcttag 385