Miyakogusa Predicted Gene
- Lj1g3v4518310.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4518310.1 Non Chatacterized Hit- tr|Q2PEQ3|Q2PEQ3_TRIPR
Putative uncharacterized protein OS=Trifolium
pratense,75.58,0,NTF2,Nuclear transport factor 2; RRM_6,NULL; RNA
recognition motif,RNA recognition motif domain; NUC,CUFF.32577.1
(1392 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81877 similar to UniRef100_A7NXI7 Cluster: Chromosome... 1134 0.0
gnl|LJGI|TC66974 similar to UniRef100_A7Q1L1 Cluster: Chromosome... 811 0.0
gnl|LJGI|TC77038 weakly similar to UniRef100_A7Q1L1 Cluster: Chr... 337 1e-91
>gnl|LJGI|TC81877 similar to UniRef100_A7NXI7 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (26%)
Length = 752
Score = 1134 bits (572), Expect = 0.0
Identities = 572/572 (100%)
Strand = Plus / Plus
Query: 666 tgcacagaccacccatgaaacacctgttgcttttgtggaagagtcttttgaggagcctgc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcacagaccacccatgaaacacctgttgcttttgtggaagagtcttttgaggagcctgc 240
Query: 726 taagaaaacttatgcatctattttacgagtttccaaagggcaatcagtgttgtcagctgc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagaaaacttatgcatctattttacgagtttccaaagggcaatcagtgttgtcagctgc 300
Query: 786 tccacaacaagccccccaatatactttcaaaagtgctcctcctcctccagaggtaaatca 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccacaacaagccccccaatatactttcaaaagtgctcctcctcctccagaggtaaatca 360
Query: 846 cgtagcacagcctgctgttcaacagtcaagttctgcttctgcgtatattcctgaatctgg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgtagcacagcctgctgttcaacagtcaagttctgcttctgcgtatattcctgaatctgg 420
Query: 906 ggctgaggcagctgaggaaggctatggaggctatggactacaagaagaaggtgaagtaac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggctgaggcagctgaggaaggctatggaggctatggactacaagaagaaggtgaagtaac 480
Query: 966 ttctgtctatgtgaggaacttgcctggtgatgttactgaaagtgaaattgagcaggaatt 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttctgtctatgtgaggaacttgcctggtgatgttactgaaagtgaaattgagcaggaatt 540
Query: 1026 taagaattttggcagaattaagccagatggaatattcattagggttcgacaggaaattgg 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taagaattttggcagaattaagccagatggaatattcattagggttcgacaggaaattgg 600
Query: 1086 agtttgctatgcatttgttgaatttgaagacatcattggtgttcaaaatgcacttcaggc 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtttgctatgcatttgttgaatttgaagacatcattggtgttcaaaatgcacttcaggc 660
Query: 1146 ttcacccttacaattggctggaaggcaagtatacatagaggagcgaaggcctaacagtgg 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttcacccttacaattggctggaaggcaagtatacatagaggagcgaaggcctaacagtgg 720
Query: 1206 cagtgcagctcgcggaggaagaggaaggggaa 1237
||||||||||||||||||||||||||||||||
Sbjct: 721 cagtgcagctcgcggaggaagaggaaggggaa 752
>gnl|LJGI|TC66974 similar to UniRef100_A7Q1L1 Cluster: Chromosome chr7 scaffold_44,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_44, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 766
Score = 811 bits (409), Expect = 0.0
Identities = 415/417 (99%)
Strand = Plus / Plus
Query: 976 gtgaggaacttgcctggtgatgttactgaaagtgaaattgagcaggaatttaagaatttt 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgaggaacttgcctggtgatgttactgaaagtgaaattgagcaggaatttaagaatttt 61
Query: 1036 ggcagaattaagccagatggaatattcattagggttcgacaggaaattggagtttgctat 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggcagaattaagccagatggaatattcattagggttcgacaggaaattggagtttgctat 121
Query: 1096 gcatttgttgaatttgaagacatcattggtgttcaaaatgcacttcaggcttcaccctta 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcatttgttgaatttgaagacatcattggtgttcaaaatgcacttcaggcttcaccctta 181
Query: 1156 caattggctggaaggcaagtatacatagaggagcgaaggcctaacagtggcagtgcagct 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 caattggctggaaggcaagtatacatagaggagcgaaggcctaacagtggcagtgcagct 241
Query: 1216 cgcggaggaagaggaaggggaagaggcagaggcggttatccaacagatgctccaagagga 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cgcggaggaagaggaaggggaagaggcagaggcggttatccaacagatgctccaagagga 301
Query: 1276 cgtttcggcggaaggagcttggggaggggtagttatcaggatagaggtgatggttatcaa 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cgtttcggcggaaggagcttggggaggggtagttatcaggatagaggtgatggttatcaa 361
Query: 1336 cagcgtgatagttgtcagcagcgtgatggttatcagcagcgtggttcacgctaggaa 1392
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 cagcgtgatagttatcagcagcgtgatggttatcagcagcgtggttcacgataggaa 418
>gnl|LJGI|TC77038 weakly similar to UniRef100_A7Q1L1 Cluster: Chromosome chr7
scaffold_44, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_44, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 813
Score = 337 bits (170), Expect = 1e-91
Identities = 173/174 (99%)
Strand = Plus / Plus
Query: 1 atggcgtcttcgtttacgggttctgttagtgctgcccaggtgggttcctactttgtggga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 295 atggcgtcttcgtttacgggttctgttagtgctgcccaggagggttcctactttgtggga 354
Query: 61 cagtactatcaagttcttcgccagcaaccaagtctggttcatcagttttactctgattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagtactatcaagttcttcgccagcaaccaagtctggttcatcagttttactctgattcc 414
Query: 121 agcagcatgattcgtgtggatggagatatcacagagactgcacctgatgtgctg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agcagcatgattcgtgtggatggagatatcacagagactgcacctgatgtgctg 468
Score = 139 bits (70), Expect = 5e-32
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 177 aattcattcgattgtcacttcgctgactttttcgactattgagatcaagacaatcaattc 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 740 aattcattcgattgtcacttcgctgaatttttcgactattgagatcaagacaatcaattc 799
Query: 237 ccttgattcctgga 250
||||||||||||||
Sbjct: 800 ccttgattcctgga 813