Miyakogusa Predicted Gene
- Lj1g3v4516120.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4516120.1 CUFF.32575.1
(423 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68659 UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4... 839 0.0
gnl|LJGI|BI420713 homologue to UniRef100_Q7X9K1 Cluster: Ribosom... 745 0.0
gnl|LJGI|TC72333 UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4... 490 e-138
gnl|LJGI|TC59373 similar to UniRef100_A9RL16 Cluster: Predicted ... 159 2e-38
>gnl|LJGI|TC68659 UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4; Magnoliophyta|Rep:
Ribosomal Pr 117 - Triticum aestivum (Wheat), partial
(95%)
Length = 592
Score = 839 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Plus
Query: 1 atgtcgaagcgaggtcgcggtggttcggcgggtaacaagttcaggatgtcactgggtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 atgtcgaagcgaggtcgcggtggttcggcgggtaacaagttcaggatgtcactgggtctt 89
Query: 61 ccggtggcggcgacggtgaactgcgccgacaacacgggagcgaagaacctgtacatcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ccggtggcggcgacggtgaactgcgccgacaacacgggagcgaagaacctgtacatcatt 149
Query: 121 tcagtgaaagggatcaagggaaggctgaaccgtttgccttctgcttgcgtcggtgacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tcagtgaaagggatcaagggaaggctgaaccgtttgccttctgcttgcgtcggtgacatg 209
Query: 181 gtgatggcgactgtcaagaagggaaagcctgatctgcgtaagaaggtgcttcctgctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gtgatggcgactgtcaagaagggaaagcctgatctgcgtaagaaggtgcttcctgctgtc 269
Query: 241 atcgttcgtcagcgcaagccttggcgccgaaaggacggtgttttcatgtatttcgaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgttcgtcagcgcaagccttggcgccgaaaggacggtgttttcatgtatttcgaagat 329
Query: 301 aatgctggtgtaattgtgaatccaaagggtgaaatgaaaggttctgctatcactggtcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatgctggtgtaattgtgaatccaaagggtgaaatgaaaggttctgctatcactggtcca 389
Query: 361 attggaaaggagtgtgcagatctgtggcctaggattgcaagtgctgcaaatgctattgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attggaaaggagtgtgcagatctgtggcctaggattgcaagtgctgcaaatgctattgtt 449
Query: 421 tag 423
|||
Sbjct: 450 tag 452
>gnl|LJGI|BI420713 homologue to UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4;
Magnoliophyta|Rep: Ribosomal Pr 117 - Triticum aestivum
(Wheat), partial (93%)
Length = 533
Score = 745 bits (376), Expect = 0.0
Identities = 413/424 (97%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 1 atgtcgaagcgaggtcgcggtggttcggcgggtaacaagttcaggatgtcactgggtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 atgtcgaagcgaggtcgcggtggttcggcgggtaacaagttcaggatgtcactgggtctt 80
Query: 61 ccggtggcggcgacggtgaactgcgccgacaacacgggagcgaagaacctgtacatcatt 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81 ccggtggcggcgacggtgaactgttttttcaacacgggagcgaagaacctgtacatcatt 140
Query: 121 tcagtgaaagggat-caagggaaggctgaaccgtttgccttctgcttgcgtcggtgacat 179
||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tcagtgatattgtttcaagggaaggctgaaccgtttgccttctgcttgcgtcggtgacat 200
Query: 180 ggtgatggcgactgtcaagaagggaaagcctgatctgcgtaagaaggtgcttcctgctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgatggcgactgtcaagaagggaaagcctgatctgcgtaagaaggtgcttcctgctgt 260
Query: 240 catcgttcgtcagcgcaagccttggcgccgaaaggacggtgttttcatgtatttcgaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcgttcgtcagcgcaagccttggcgccgaaaggacggtgttttcatgtatttcgaaga 320
Query: 300 taatgctggtgtaattgtgaatccaaagggtgaaatgaaaggttctgctatcactggtcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgctggtgtaattgtgaatccaaagggtgaaatgaaaggttctgctatcactggtcc 380
Query: 360 aattggaaaggagtgtgcagatctgtggcctaggattgcaagtgctgcaaatgctattgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggaaaggagtgtgcagatctgtggcctaggattgcaagtgctgcaaatgctattgt 440
Query: 420 ttag 423
||||
Sbjct: 441 ttag 444
>gnl|LJGI|TC72333 UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4; Magnoliophyta|Rep:
Ribosomal Pr 117 - Triticum aestivum (Wheat), partial
(95%)
Length = 629
Score = 490 bits (247), Expect = e-138
Identities = 376/419 (89%)
Strand = Plus / Plus
Query: 1 atgtcgaagcgaggtcgcggtggttcggcgggtaacaagttcaggatgtcactgggtctt 60
|||||||||||||| |||||||| ||||| || ||||||||| ||||||| ||||||||
Sbjct: 56 atgtcgaagcgagggcgcggtggatcggccggaaacaagttccggatgtcgctgggtctc 115
Query: 61 ccggtggcggcgacggtgaactgcgccgacaacacgggagcgaagaacctgtacatcatt 120
|||||||||||||||||||||||||| |||||||| || |||||||| || |||||||||
Sbjct: 116 ccggtggcggcgacggtgaactgcgctgacaacaccggtgcgaagaatctctacatcatt 175
Query: 121 tcagtgaaagggatcaagggaaggctgaaccgtttgccttctgcttgcgtcggtgacatg 180
|| ||||| ||||||||||| | ||||||||| | ||||||||||||||||| ||||||
Sbjct: 176 tccgtgaaggggatcaagggtcgtctgaaccgtctcccttctgcttgcgtcggagacatg 235
Query: 181 gtgatggcgactgtcaagaagggaaagcctgatctgcgtaagaaggtgcttcctgctgtc 240
|||||||| || ||||||||||||||||| |||||| | ||||||||| | |||||||||
Sbjct: 236 gtgatggccaccgtcaagaagggaaagcccgatctgaggaagaaggtgttgcctgctgtc 295
Query: 241 atcgttcgtcagcgcaagccttggcgccgaaaggacggtgttttcatgtatttcgaagat 300
|||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 296 atcgttcgccagcgcaagccttggcgccgaaaggacggggttttcatgtactttgaagat 355
Query: 301 aatgctggtgtaattgtgaatccaaagggtgaaatgaaaggttctgctatcactggtcca 360
|||||||| || ||||| ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 356 aatgctggggtcattgtcaatcccaagggagaaatgaaaggttccgctatcactggtcca 415
Query: 361 attggaaaggagtgtgcagatctgtggcctaggattgcaagtgctgcaaatgctattgt 419
||||| ||||||||||| ||||| ||||| |||||||||||||| || |||||||||||
Sbjct: 416 attggtaaggagtgtgctgatctatggccaaggattgcaagtgcagccaatgctattgt 474
>gnl|LJGI|TC59373 similar to UniRef100_A9RL16 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(32%)
Length = 826
Score = 159 bits (80), Expect = 2e-38
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 284 tcatgtatttcgaagataatgctggtgtaattgtgaatccaaagggtgaaatgaaaggtt 343
||||||||||| |||||||||||||||| ||||||||||| ||||| ||| |||||||||
Sbjct: 570 tcatgtatttcaaagataatgctggtgttattgtgaatcccaagggagaattgaaaggtt 629
Query: 344 ctgctatcactggtccaattggaaaggagtgtgcagatctgtggcctaggattgcaagtg 403
|||||||||||||| ||||||||||||| ||||| ||| | ||||||||||||||||||
Sbjct: 630 ctgctatcactggttcaattggaaaggaatgtgctgatataaggcctaggattgcaagtg 689
Query: 404 ctgcaaat 411
| ||||||
Sbjct: 690 cagcaaat 697