Miyakogusa Predicted Gene
- Lj1g3v4371150.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4371150.1 tr|G7KWA0|G7KWA0_MEDTR Gamma-tubulin complex
component OS=Medicago truncatula GN=MTR_7g093560 PE=4
S,77.98,0,seg,NULL; Spc97_Spc98,Spc97/Spc98; coiled-coil,NULL;
GAMMA-TUBULIN COMPLEX COMPONENT 3 (GCP-3),Gamma,CUFF.32304.1
(2334 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68357 similar to UniRef100_A7PVY6 Cluster: Chromosome... 1068 0.0
gnl|LJGI|DC598563 weakly similar to UniRef100_A7PVY6 Cluster: Ch... 216 5e-55
>gnl|LJGI|TC68357 similar to UniRef100_A7PVY6 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 746
Score = 1068 bits (539), Expect = 0.0
Identities = 545/547 (99%)
Strand = Plus / Plus
Query: 295 gaacaaatcaaacgccgcctcgcccctcacggccgctccgccgacgcactctcgttcgcc 354
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 gaacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgcc 259
Query: 355 gacttatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgctc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacttatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgctc 319
Query: 415 tacctcctcgagatcctcgcagaagatcgcaaggcactggctcagacccagttccatccc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacctcctcgagatcctcgcagaagatcgcaaggcactggctcagacccagttccatccc 379
Query: 475 tccctcattcttccctccctcccaatccctcccaaccaccaccacgagggacccaacgac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctcattcttccctccctcccaatccctcccaaccaccaccacgagggacccaacgac 439
Query: 535 ggcgttttgctcctcgctaaggatccagagaatcgccgcgacatcgcgtttcgcgagttt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcgttttgctcctcgctaaggatccagagaatcgccgcgacatcgcgtttcgcgagttt 499
Query: 595 gtgaatttggtcagggaggaaaatgaggtctccgaggaggctctggtgaaagacgtgctc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgaatttggtcagggaggaaaatgaggtctccgaggaggctctggtgaaagacgtgctc 559
Query: 655 tatgcctgccaaggggttgaaggtaaatacgtgaaattcgatgttgtcaacaattgttac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgcctgccaaggggttgaaggtaaatacgtgaaattcgatgttgtcaacaattgttac 619
Query: 715 gctttattggattcgattagggtcactagggccactaggagcatggttcataagcttagt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctttattggattcgattagggtcactagggccactaggagcatggttcataagcttagt 679
Query: 775 gaactaggagggttgtttaagaaggttactgggtatatatggcagagtatggatcggttt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaactaggagggttgtttaagaaggttactgggtatatatggcagagtatggatcggttt 739
Query: 835 ccggccg 841
|||||||
Sbjct: 740 ccggccg 746
Score = 256 bits (129), Expect = 5e-67
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 9 agaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgtctcctccg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgtctcctccg 63
Query: 69 ccacaatctccccgccgactcaccaccactaaaccctaactccccggaatttcaaaaacc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ccacaatctccccgccgactcaccaccactaaaccctaactccccggaatttcaaaaacc 123
Query: 129 cctccgcta 137
|||||||||
Sbjct: 124 cctccgcta 132
Score = 125 bits (63), Expect = 1e-27
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 206 aacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccg 260
Query: 266 act 268
|||
Sbjct: 261 act 263
>gnl|LJGI|DC598563 weakly similar to UniRef100_A7PVY6 Cluster: Chromosome chr8
scaffold_34, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_34, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 395
Score = 216 bits (109), Expect = 5e-55
Identities = 130/137 (94%)
Strand = Plus / Plus
Query: 1 atggacgaagaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgt 60
|||||| |||||||||||||||| ||||||||| ||||||||| || |||||||||||||
Sbjct: 73 atggaccaagaagaagagcagcacaagcttccaaatctggtcaggggactcgtccaccgt 132
Query: 61 ctcctccgccacaatctccccgccgactcaccaccactaaaccctaactccccggaattt 120
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 133 ctcctcccccacaatctccccgcccactcaccaccactaaaccctaactccccggaattt 192
Query: 121 caaaaacccctccgcta 137
|||||||||||||||||
Sbjct: 193 caaaaacccctccgcta 209
Score = 196 bits (99), Expect = 4e-49
Identities = 111/115 (96%)
Strand = Plus / Plus
Query: 299 aaatcaaacgccgcctcgcccctcacggccgctccgccgacgcactctcgttcgccgact 358
||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 aaatcaaacgccgtctccccactcacgggcgctccgccgacgcactctcgttcgccgact 340
Query: 359 tatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgct 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgct 395
Score = 103 bits (52), Expect = 5e-21
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 209 aaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccgact 268
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 aaatcaaacgccgtctccccactcacgggcgctccgccgacgcactctcgttcgccgact 340