Miyakogusa Predicted Gene

Lj1g3v4371150.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4371150.1 tr|G7KWA0|G7KWA0_MEDTR Gamma-tubulin complex
component OS=Medicago truncatula GN=MTR_7g093560 PE=4
S,77.98,0,seg,NULL; Spc97_Spc98,Spc97/Spc98; coiled-coil,NULL;
GAMMA-TUBULIN COMPLEX COMPONENT 3 (GCP-3),Gamma,CUFF.32304.1
         (2334 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68357 similar to UniRef100_A7PVY6 Cluster: Chromosome...  1068   0.0  
gnl|LJGI|DC598563 weakly similar to UniRef100_A7PVY6 Cluster: Ch...   216   5e-55

>gnl|LJGI|TC68357 similar to UniRef100_A7PVY6 Cluster: Chromosome chr8 scaffold_34,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_34, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 746

 Score = 1068 bits (539), Expect = 0.0
 Identities = 545/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 295 gaacaaatcaaacgccgcctcgcccctcacggccgctccgccgacgcactctcgttcgcc 354
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 gaacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgcc 259

                                                                       
Query: 355 gacttatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgctc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacttatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgctc 319

                                                                       
Query: 415 tacctcctcgagatcctcgcagaagatcgcaaggcactggctcagacccagttccatccc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacctcctcgagatcctcgcagaagatcgcaaggcactggctcagacccagttccatccc 379

                                                                       
Query: 475 tccctcattcttccctccctcccaatccctcccaaccaccaccacgagggacccaacgac 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctcattcttccctccctcccaatccctcccaaccaccaccacgagggacccaacgac 439

                                                                       
Query: 535 ggcgttttgctcctcgctaaggatccagagaatcgccgcgacatcgcgtttcgcgagttt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcgttttgctcctcgctaaggatccagagaatcgccgcgacatcgcgtttcgcgagttt 499

                                                                       
Query: 595 gtgaatttggtcagggaggaaaatgaggtctccgaggaggctctggtgaaagacgtgctc 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgaatttggtcagggaggaaaatgaggtctccgaggaggctctggtgaaagacgtgctc 559

                                                                       
Query: 655 tatgcctgccaaggggttgaaggtaaatacgtgaaattcgatgttgtcaacaattgttac 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgcctgccaaggggttgaaggtaaatacgtgaaattcgatgttgtcaacaattgttac 619

                                                                       
Query: 715 gctttattggattcgattagggtcactagggccactaggagcatggttcataagcttagt 774
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctttattggattcgattagggtcactagggccactaggagcatggttcataagcttagt 679

                                                                       
Query: 775 gaactaggagggttgtttaagaaggttactgggtatatatggcagagtatggatcggttt 834
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaactaggagggttgtttaagaaggttactgggtatatatggcagagtatggatcggttt 739

                  
Query: 835 ccggccg 841
           |||||||
Sbjct: 740 ccggccg 746



 Score =  256 bits (129), Expect = 5e-67
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   agaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgtctcctccg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   agaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgtctcctccg 63

                                                                       
Query: 69  ccacaatctccccgccgactcaccaccactaaaccctaactccccggaatttcaaaaacc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ccacaatctccccgccgactcaccaccactaaaccctaactccccggaatttcaaaaacc 123

                    
Query: 129 cctccgcta 137
           |||||||||
Sbjct: 124 cctccgcta 132



 Score =  125 bits (63), Expect = 1e-27
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                       
Query: 206 aacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccg 260

              
Query: 266 act 268
           |||
Sbjct: 261 act 263


>gnl|LJGI|DC598563 weakly similar to UniRef100_A7PVY6 Cluster: Chromosome chr8
           scaffold_34, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_34, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (4%)
          Length = 395

 Score =  216 bits (109), Expect = 5e-55
 Identities = 130/137 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggacgaagaagaagagcagcagaagcttccagatctggtcaaggaactcgtccaccgt 60
           |||||| |||||||||||||||| ||||||||| ||||||||| || |||||||||||||
Sbjct: 73  atggaccaagaagaagagcagcacaagcttccaaatctggtcaggggactcgtccaccgt 132

                                                                       
Query: 61  ctcctccgccacaatctccccgccgactcaccaccactaaaccctaactccccggaattt 120
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 133 ctcctcccccacaatctccccgcccactcaccaccactaaaccctaactccccggaattt 192

                            
Query: 121 caaaaacccctccgcta 137
           |||||||||||||||||
Sbjct: 193 caaaaacccctccgcta 209



 Score =  196 bits (99), Expect = 4e-49
 Identities = 111/115 (96%)
 Strand = Plus / Plus

                                                                       
Query: 299 aaatcaaacgccgcctcgcccctcacggccgctccgccgacgcactctcgttcgccgact 358
           ||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 aaatcaaacgccgtctccccactcacgggcgctccgccgacgcactctcgttcgccgact 340

                                                                  
Query: 359 tatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgct 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatactccaagttcgccgccagagccaccactgttaacaacaaatgggccctgct 395



 Score =  103 bits (52), Expect = 5e-21
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                       
Query: 209 aaatcaaacgccgtctcgccactcacggccgctccgccgacgcactctcgttcgccgact 268
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 aaatcaaacgccgtctccccactcacgggcgctccgccgacgcactctcgttcgccgact 340