Miyakogusa Predicted Gene

Lj1g3v4289040.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4289040.2 CUFF.32202.2
         (348 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61457 similar to UniRef100_A7P7V8 Cluster: Chromosome...   228   2e-59
gnl|LJGI|FS330914 weakly similar to UniRef100_A7PCD9 Cluster: Ch...    54   6e-07

>gnl|LJGI|TC61457 similar to UniRef100_A7P7V8 Cluster: Chromosome chr3 scaffold_8,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_8, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (34%)
          Length = 1162

 Score =  228 bits (115), Expect = 2e-59
 Identities = 151/163 (92%)
 Strand = Plus / Plus

                                                                       
Query: 149 ttgagaggatggtgtcatttaaggggatgattatacaatgtagctcaatcatagcggaaa 208
           ||||||||||||||||| | ||||| |||||||||  |||||||||||||||| | ||||
Sbjct: 801 ttgagaggatggtgtcactcaagggaatgattataagatgtagctcaatcatacctgaaa 860

                                                                       
Query: 209 taagggaagctatatttaggtgtcttgtgtgtggattctgcactgaaccagttgctgtag 268
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 861 taagggaagctatatttaggtgtcttgtgtgtgggttttgcactgaaccagttgctgtag 920

                                                      
Query: 269 agagagggcggattactgtacctactatatgcttgagggaaga 311
           | |||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 921 aaagagggcggattactgaacctactttatgcttgagggaaga 963


>gnl|LJGI|FS330914 weakly similar to UniRef100_A7PCD9 Cluster: Chromosome chr2
           scaffold_11, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr2 scaffold_11, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (27%)
          Length = 827

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 33  ccatgcttgttggatgcatagctttgttctggaatgtcc 71
           |||||||||||||||| ||||||||| ||| ||||||||
Sbjct: 766 ccatgcttgttggatgtatagctttgctcttgaatgtcc 804