Miyakogusa Predicted Gene
- Lj1g3v4275530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4275530.1 tr|A2Q3L5|A2Q3L5_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_7g09,83.4,0,ankyrin repeats,Ankyrin repeat; zinc finger,Zinc
finger, CCCH-type; Ankyrin repeat,Ankyrin repeat-co,CUFF.32161.1
(2192 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP063686 homologue to UniRef100_A2Q3L5 Cluster: Zinc fi... 983 0.0
gnl|LJGI|TC82283 similar to UniRef100_A2Q3L5 Cluster: Zinc finge... 589 e-167
gnl|LJGI|TC73423 similar to UniRef100_A2Q3L5 Cluster: Zinc finge... 391 e-107
gnl|LJGI|AV407197 similar to UniRef100_A2Q3L5 Cluster: Zinc fing... 309 4e-83
gnl|LJGI|BP083473 UniRef100_A7Q2A5 Cluster: Chromosome chr13 sca... 109 7e-23
gnl|LJGI|TC62722 similar to UniRef100_Q0GIK4 Cluster: Cys-3-His ... 78 3e-13
gnl|LJGI|TC58284 similar to UniRef100_A7Q2A5 Cluster: Chromosome... 74 4e-12
gnl|LJGI|TC78964 similar to UniRef100_Q0GIK4 Cluster: Cys-3-His ... 68 3e-10
gnl|LJGI|TC72943 similar to UniRef100_A7Q2A5 Cluster: Chromosome... 64 4e-09
>gnl|LJGI|BP063686 homologue to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1;
Medicago truncatula|Rep: Zinc finger, CCCH-type -
Medicago truncatula (Barrel medic), partial (21%)
Length = 514
Score = 983 bits (496), Expect = 0.0
Identities = 513/516 (99%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 612 atattcacttcctttatcaacttcacctgagaacgggtctccttccgcactggatctcca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atattcacttcctttatcaacttcacctgagaacgggtctccttccgcactggatctcca 455
Query: 672 gttgaagtcaaagtcaagtgatgtccctgctttttctgtatctgagaagaaagaatatcc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gttgaagtcaaagtcaagtgatgtccctgctttttctgtatctgagaagaaagaatatcc 395
Query: 732 tgttgatccatcccttccagacatcaagaacagcatatattcaactgatgaattccggat 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgttgatccatcccttccagacatcaagaacagcatatattcaactgatgaattccggat 335
Query: 792 gtattctttcaaggttcggccttgctctcgtgcttattcacatgattggacagagtgccc 851
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 gtattctttcaaggttcggccttgctcccgtgcttattcacatgattggacagagtgccc 275
Query: 852 ttttgttcatccaggggagaatgctcgtagaagggaccccagaaagtaccattacagctg 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttttgttcatccaggggagaatgctcgtagaagggaccccagaaagtaccattacagctg 215
Query: 912 tgtcccttgtcctgattttcgtaagggtgcttgccggcgaggagatatgtgtgaatatgc 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgtcccttgtcctgattttcgtaagggtgcttgccggcgaggagatatgtgtgaatatgc 155
Query: 972 tcatggggtatttgagtgctggctgcatccagcacagtatcgaactcgtctctgcaagga 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcatggggtatttgagtgctggctgcatccagcacagtatcgaactcgtctctgcaagga 95
Query: 1032 tgggacaaattgctccagaagaatttgcttctttgctcatactgctgaagagcttagacc 1091
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 tgggac-aattgctccagaagaatttgcttctttgctcatactgctgaagagcttagacc 36
Query: 1092 attatatgtttcaactggttctgctgttccctctcc 1127
|||||||||||| |||||||||||||||||||||||
Sbjct: 35 attatatgtttc-actggttctgctgttccctctcc 1
>gnl|LJGI|TC82283 similar to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1;
Medicago truncatula|Rep: Zinc finger, CCCH-type -
Medicago truncatula (Barrel medic), partial (12%)
Length = 529
Score = 589 bits (297), Expect = e-167
Identities = 300/301 (99%)
Strand = Plus / Plus
Query: 1 atgtgctgtgagtttgagcggttaaatcctgcaccgtctctgtcgttatctcctactttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atgtgctgtgagtttgagcggttaaatcctgcaccgtctctgtcgttatctcctactttg 288
Query: 61 acacgcgccgttgcatcgagaaactacgtgatgaatcactttactgttgacactggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acacgcgccgttgcatcgagaaactacgtgatgaatcactttactgttgacactggagat 348
Query: 121 tctctcgtgagcctgcttgagcttgcagccaataatgatgttgaaggtttcaaaagattg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctctcgcgagcctgcttgagcttgcagccaataatgatgttgaaggtttcaaaagattg 408
Query: 181 atcgagtgtgatccttcctctgtggatgaggttgggttgtggtatggtcgtaggaaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atcgagtgtgatccttcctctgtggatgaggttgggttgtggtatggtcgtaggaaggga 468
Query: 241 tcaaagcagatggtcaatgagcaaagaacacctttgatggttgctgctacctatggtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcaaagcagatggtcaatgagcaaagaacacctttgatggttgctgctacctatggtagc 528
Query: 301 a 301
|
Sbjct: 529 a 529
>gnl|LJGI|TC73423 similar to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1;
Medicago truncatula|Rep: Zinc finger, CCCH-type -
Medicago truncatula (Barrel medic), partial (7%)
Length = 831
Score = 391 bits (197), Expect = e-107
Identities = 200/201 (99%)
Strand = Plus / Plus
Query: 1992 atgggtgcagtcacttgttaaagaatctccaaatgagactaaagagaaatcgtcaactgc 2051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggtgcagtcacttgttaaagaatctccaaatgagactaaagagaaatcgtcaactgc 60
Query: 2052 tgtctcaagtgttgcagctgctggatcctccggtgagggatcaaatatgaacacccaaat 2111
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 tgtctcaagtgttgcagctgctggatcctccgctgagggatcaaatatgaacacccaaat 120
Query: 2112 ggagtccgttgatcatgctgtactgggaacatggcttgaacagatgcagcttgatcatct 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagtccgttgatcatgctgtactgggaacatggcttgaacagatgcagcttgatcatct 180
Query: 2172 tgtggctcagcaaaactgaaa 2192
|||||||||||||||||||||
Sbjct: 181 tgtggctcagcaaaactgaaa 201
>gnl|LJGI|AV407197 similar to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1;
Medicago truncatula|Rep: Zinc finger, CCCH-type -
Medicago truncatula (Barrel medic), partial (7%)
Length = 160
Score = 309 bits (156), Expect = 4e-83
Identities = 159/160 (99%)
Strand = Plus / Plus
Query: 1473 cggacggatgaaacccctgactccttctaatcttgatgagctcttttctgctgagagttc 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggacggatgaaacccctgactccttctaatcttgatgagctcttttctgctgagagttc 60
Query: 1533 ttctcctcgatatgctgatccaacactgaattcagctgtcttttctccaactcacaaatc 1592
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 ttctcctcgatatgctgatccaacactgaattcagctgtcttttctcctactcacaaatc 120
Query: 1593 agctgtctttaatcagtttcagcagcagcaaagcatgttg 1632
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctgtctttaatcagtttcagcagcagcaaagcatgttg 160
>gnl|LJGI|BP083473 UniRef100_A7Q2A5 Cluster: Chromosome chr13 scaffold_45, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 214
Score = 109 bits (55), Expect = 7e-23
Identities = 127/151 (84%)
Strand = Plus / Minus
Query: 713 ctgagaagaaagaatatcctgttgatccatcccttccagacatcaagaacagcatatatt 772
||||||| ||||||||||| |||||||||| ||||| || || || ||||||||||||
Sbjct: 154 ctgagaaaaaagaatatccaattgatccatcacttcctgatataaaaaacagcatatatg 95
Query: 773 caactgatgaattccggatgtattctttcaaggttcggccttgctctcgtgcttattcac 832
| || || || || || |||| ||| ||||||||||| |||||||| ||||| || || |
Sbjct: 94 ccacagacgagtttcgcatgttttcattcaaggttcgcccttgctcccgtgcatactctc 35
Query: 833 atgattggacagagtgcccttttgttcatcc 863
|||||||||| ||||| ||||||||||||||
Sbjct: 34 atgattggactgagtgtccttttgttcatcc 4
>gnl|LJGI|TC62722 similar to UniRef100_Q0GIK4 Cluster: Cys-3-His zinc finger protein;
n=1; Capsicum annuum|Rep: Cys-3-His zinc finger protein
- Capsicum annuum (Bell pepper), partial (41%)
Length = 1242
Score = 77.8 bits (39), Expect = 3e-13
Identities = 132/163 (80%)
Strand = Plus / Plus
Query: 713 ctgagaagaaagaatatcctgttgatccatcccttccagacatcaagaacagcatatatt 772
||||||||||||| ||||||| ||||| |||||||| ||||||||||| | ||||||
Sbjct: 752 ctgagaagaaagattatcctgctgatctctcccttccggacatcaagaatgggatatatg 811
Query: 773 caactgatgaattccggatgtattctttcaaggttcggccttgctctcgtgcttattcac 832
||| ||||| || |||||||| ||||| || ||||| || | |||||||| |
Sbjct: 812 gaaccgatgagtttaggatgtatgtgttcaaagtgaaaccttgttcaagggcttattctc 871
Query: 833 atgattggacagagtgcccttttgttcatccaggggagaatgc 875
|||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 872 atgattggactgagtgcccctttgttcacccgggggagaatgc 914
>gnl|LJGI|TC58284 similar to UniRef100_A7Q2A5 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 844
Score = 73.8 bits (37), Expect = 4e-12
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 258 tgagcaaagaacacctttgatggttgctgctacctatggtagcattgat 306
|||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgagcacaggactcctttgatggttgctgctacctatggtagcattgat 480
>gnl|LJGI|TC78964 similar to UniRef100_Q0GIK4 Cluster: Cys-3-His zinc finger protein;
n=1; Capsicum annuum|Rep: Cys-3-His zinc finger protein
- Capsicum annuum (Bell pepper), partial (59%)
Length = 2650
Score = 67.9 bits (34), Expect = 3e-10
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 823 gcttattcacatgattggacagagtgcccttttgttcatccaggggagaatgctcgtaga 882
||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| | ||
Sbjct: 828 gcttactcccatgactggactgagtgtccttttgttcatccaggggagaatgcaaggagg 887
Query: 883 agggaccccagaaagtaccattacagctgtgtcccttgtcctgattttcg 932
|| ||||| || || |||| ||| |||||||| || || ||||| |||||
Sbjct: 888 agagacccaaggaaatacccttatagctgtgttccctgccctgagtttcg 937
>gnl|LJGI|TC72943 similar to UniRef100_A7Q2A5 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 1189
Score = 63.9 bits (32), Expect = 4e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1942 agatcatcttcgtttgagcttgggaacaatggcgaggagcctgatttatcatgggt 1997
|||||||| || ||||||||||| |||||||| || ||||||||| ||||||||||
Sbjct: 517 agatcatcctcatttgagcttggaaacaatggagaagagcctgatctatcatgggt 572