Miyakogusa Predicted Gene
- Lj1g3v4139600.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4139600.1 Non Chatacterized Hit- tr|D8U488|D8U488_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.1,3e-19,SPC25,Signal peptidase complex subunit 2; SUBFAMILY NOT
NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 25 K,CUFF.31989.1
(546 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78337 weakly similar to UniRef100_Q6NQE4 Cluster: At4... 1074 0.0
gnl|LJGI|TC57242 similar to UniRef100_Q6NQE4 Cluster: At4g04200;... 622 e-178
gnl|LJGI|BP046396 similar to UniRef100_A7PIC5 Cluster: Chromosom... 250 8e-66
>gnl|LJGI|TC78337 weakly similar to UniRef100_Q6NQE4 Cluster: At4g04200; n=1;
Arabidopsis thaliana|Rep: At4g04200 - Arabidopsis
thaliana (Mouse-ear cress), partial (90%)
Length = 779
Score = 1074 bits (542), Expect = 0.0
Identities = 545/546 (99%)
Strand = Plus / Plus
Query: 1 atggcgtccaagtctccgaagaaaaccaacctcttagatcacaactccatcaagcacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atggcgtccaagtctccgaagaaaaccaacctcttagatcacaactccatcaagcacatt 131
Query: 61 ctcgacgagtctgtctctgagatagtgaagagtaatgggtatgtggaagatgtgagattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctcgacgagtctgtctctgagatagtgaagagtaatgggtatgtggaagatgtgagattg 191
Query: 121 agcaacgtgagactgttgattggggctgtcatcatcgtcattgctctcttctctcagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agcaacgtgagactgttgattggggctgtcatcatcgtcattgctctcttctctcagttt 251
Query: 181 tacaagaagaagttccccgagaataaggattttgtccttgcctgcatcgctttgtatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tacaagaagaagttccccgagaataaggattttgtccttgcctgcatcgctttgtatgta 311
Query: 241 atcttcaatgggttgttgcagctgatcatatacactaaggagaaagatgctatactgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atcttcaatgggttgttgcagctgatcatatacactaaggagaaagatgctatactgttt 371
Query: 301 acttatcctcctgctggatccggtaccggtttggtagtttcctccaaattgcctagattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acttatcctcctgctggatccggtaccggtttggtagtttcctccaaattgcctagattt 431
Query: 361 tctgacatgtacacgcttaccatagcaagtgcagagccaaaatcaatttctacaaatgaa 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttgacatgtacacgcttaccatagcaagtgcagagccaaaatcaatttctacaaatgaa 491
Query: 421 ccagtacattttactaaaagtgttactcagtggttcaccaacgacggaatcttagttgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccagtacattttactaaaagtgttactcagtggttcaccaacgacggaatcttagttgag 551
Query: 481 ggcctcttttggaaggatgttgaagcactgatagctcaatatacgaaaccaaagaagagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggcctcttttggaaggatgttgaagcactgatagctcaatatacgaaaccaaagaagagc 611
Query: 541 aagtga 546
||||||
Sbjct: 612 aagtga 617
>gnl|LJGI|TC57242 similar to UniRef100_Q6NQE4 Cluster: At4g04200; n=1; Arabidopsis
thaliana|Rep: At4g04200 - Arabidopsis thaliana
(Mouse-ear cress), partial (91%)
Length = 877
Score = 622 bits (314), Expect = e-178
Identities = 495/555 (89%), Gaps = 9/555 (1%)
Strand = Plus / Plus
Query: 1 atggcgtccaagtctccgaagaaaaccaacctcttagatcacaactccatcaagcacatt 60
||||||||||| |||| |||||| |||| ||| | |||||||||||||||||||||||
Sbjct: 99 atggcgtccaaatctctaaagaaagccaatctcctcgatcacaactccatcaagcacatc 158
Query: 61 ctcgacgagtctgtctctgagatagtgaagagtaatgggtatgtggaagatgtgagattg 120
||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||
Sbjct: 159 ctcgacgagtctgtctctgagattgtaacgagtcgtgggtatgtggaagatgtgagattg 218
Query: 121 agcaacgtgagactgttgattggggctgtcatcatcgtcattgctctcttctctcagttt 180
||||||||||| || ||| ||||| |||||||||| |||||||||||||| |||| ||
Sbjct: 219 agcaacgtgaggcttttggttgggactgtcatcattgtcattgctctctttgctcaattc 278
Query: 181 tacaagaagaagttccccgagaataaggattttgtccttgcctgcatcgctttgtatgta 240
||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||
Sbjct: 279 tacaagaagaagttccctgagaatcgggattttctccttgcctgcatcgccttgtatgtg 338
Query: 241 atcttcaatgggttgttgcagctgatcatatacactaaggagaaagatgctatactgttt 300
|||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 339 atcttcaatggggtgttgcagctgatcatatacactaaggagaaaaatgccattctgttt 398
Query: 301 acttatcctcctgctggat------ccggtaccggtttggtagtttcctccaaattgcct 354
||||||||||||||||||| || |||| ||||||||||||||||||||| |||||
Sbjct: 399 acttatcctcctgctggatcctttaccagtactggtttggtagtttcctccaaactgcct 458
Query: 355 agattttctgacatgtacacgcttaccatagcaagtgcagagccaaaatcaatttctaca 414
|| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||
Sbjct: 459 aggttttctgacatgtacacacttaccatagcaagtgctgatccaaaatcaatttctgca 518
Query: 415 aatgaaccagtacattttactaaaagtgttactcagtggttcaccaacgacggaatctta 474
||||| || ||||| ||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 519 aatgagcctaagcatttaactaaaagtgttactcagtggttcaccaaggatggagtctta 578
Query: 475 gttgagggcctcttttggaaggatgttgaagcactgatagctcaatatacga---aacca 531
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 579 gttgagggcctcttttggaaggatgttgaagctctgatagctcaatatacgaaagaacca 638
Query: 532 aagaagagcaagtga 546
|||||||| ||||||
Sbjct: 639 aagaagagtaagtga 653
>gnl|LJGI|BP046396 similar to UniRef100_A7PIC5 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (72%)
Length = 553
Score = 250 bits (126), Expect = 8e-66
Identities = 204/230 (88%)
Strand = Plus / Plus
Query: 1 atggcgtccaagtctccgaagaaaaccaacctcttagatcacaactccatcaagcacatt 60
||||||||||| |||| |||||| |||| ||| | |||||||||||||||||||||||
Sbjct: 47 atggcgtccaaatctctaaagaaagccaatctcctcgatcacaactccatcaagcacatc 106
Query: 61 ctcgacgagtctgtctctgagatagtgaagagtaatgggtatgtggaagatgtgagattg 120
||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||
Sbjct: 107 ctcgacgagtctgtctctgagattgtaacgagtcgtgggtatgtggaagatgtgagattg 166
Query: 121 agcaacgtgagactgttgattggggctgtcatcatcgtcattgctctcttctctcagttt 180
||||||||||| || ||| ||||| |||||||||| |||||||||||||| |||| ||
Sbjct: 167 agcaacgtgaggcttttggttgggactgtcatcattgtcattgctctctttgctcaattc 226
Query: 181 tacaagaagaagttccccgagaataaggattttgtccttgcctgcatcgc 230
||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 227 tacaagaagaagttccctgagaatcgggattttctccttgcctgcatcgc 276
Score = 73.8 bits (37), Expect = 1e-12
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 234 gtatgtaatcttcaatgggttgttgcagctgatcatatacactaa 278
|||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 509 gtatgtgatcttcaatggggtgttgcagctgatcatatacactaa 553