Miyakogusa Predicted Gene

Lj1g3v4119290.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4119290.1 tr|Q2HSY2|Q2HSY2_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089670 PE=4 SV=1,45.45,2e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; F-box domain,F-box domain,
cyclin-like; FBOX,F-box ,CUFF.31961.1
         (330 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO024643 weakly similar to UniRef100_Q2HSX6 Cluster: Cy...   220   4e-57

>gnl|LJGI|GO024643 weakly similar to UniRef100_Q2HSX6 Cluster: Cyclin-like F-box; n=1;
           Medicago truncatula|Rep: Cyclin-like F-box - Medicago
           truncatula (Barrel medic), partial (49%)
          Length = 631

 Score =  220 bits (111), Expect = 4e-57
 Identities = 174/195 (89%)
 Strand = Plus / Plus

                                                                       
Query: 34  tctctcttgaacctgcctgaacacgttctggactgcatcctcaaacgcctctcaccaatg 93
           |||||||||||  ||||||||| | ||||||| ||||||||||||| |||||||||||| 
Sbjct: 51  tctctcttgaatttgcctgaacccattctggattgcatcctcaaactcctctcaccaatc 110

                                                                       
Query: 94  gagctcatcaaaatgtccgaggtgtgcacttgtttaagggacgcatgtcgaagtgatcat 153
           ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 111 gagctcatcaaaatgtccatggtgtgcacttgtttaagggatgcatgtcgaagtgatcat 170

                                                                       
Query: 154 ctgtgggaaaaccacatgaaacagaaatggggtagaatcattggtgatgatactttcgag 213
            |||||||||||||||| || ||||||||||||| |||| ||||||||  | ||||| | 
Sbjct: 171 ttgtgggaaaaccacatcaaccagaaatggggtacaatcgttggtgattttgctttcaaa 230

                          
Query: 214 gaatggcaatggcac 228
           || ||||||||||||
Sbjct: 231 gagtggcaatggcac 245