Miyakogusa Predicted Gene
- Lj1g3v4107020.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4107020.1 tr|G7L5Y2|G7L5Y2_MEDTR General transcription
factor IIH subunit OS=Medicago truncatula
GN=MTR_7g0894,89.91,0,Ssl1,Ssl1-like; C1_4,TFIIH C1-like domain;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ssl1: transcription,CUFF.31953.1
(1269 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58589 similar to UniRef100_A7NZG2 Cluster: Chromosome... 1197 0.0
gnl|LJGI|TC62590 similar to UniRef100_A7NZG2 Cluster: Chromosome... 803 0.0
gnl|LJGI|FS359677 similar to UniRef100_A7NZG2 Cluster: Chromosom... 291 5e-78
>gnl|LJGI|TC58589 similar to UniRef100_A7NZG2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (44%)
Length = 804
Score = 1197 bits (604), Expect = 0.0
Identities = 604/604 (100%)
Strand = Plus / Plus
Query: 1 atgaataatatttctggaagaccacttaatggagaagtagaagatgatgatgaagatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaataatatttctggaagaccacttaatggagaagtagaagatgatgatgaagatgaa 260
Query: 61 gctaatggtggaggccttgaagcctgggagagaacttatgctgaagatagatcatgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaatggtggaggccttgaagcctgggagagaacttatgctgaagatagatcatgggag 320
Query: 121 tctttgcaagaggatgaatctggacttcttcgccccatagataatacagccattcaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgcaagaggatgaatctggacttcttcgccccatagataatacagccattcaccat 380
Query: 181 gcccagtatcgcaggcgccttcgtgcccttgcatccaaggcagctactgcacgaattcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccagtatcgcaggcgccttcgtgcccttgcatccaaggcagctactgcacgaattcag 440
Query: 241 aagggtcttatacgatacctttacattgttgtagacctgtccaaggcagctgctgagacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggtcttatacgatacctttacattgttgtagacctgtccaaggcagctgctgagacg 500
Query: 301 gactttcgaccaagtaggatggctgtgatagggagactggttgagacatttatcagggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactttcgaccaagtaggatggctgtgatagggagactggttgagacatttatcagggag 560
Query: 361 ttctttgatcagaatccacttagtcatgttggcctggttaccataaaagatggggttgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttgatcagaatccacttagtcatgttggcctggttaccataaaagatggggttgct 620
Query: 421 cattgcttaacagatcttggtggcagtcctgagtcccacatcaaagctttgacgggtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgcttaacagatcttggtggcagtcctgagtcccacatcaaagctttgacgggtaaa 680
Query: 481 ctggagtgctcaggtgacgcatccctacaaaacgcactagagcttgttgttggctatcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggagtgctcaggtgacgcatccctacaaaacgcactagagcttgttgttggctatcta 740
Query: 541 aatcaaatcccatcatatggtcatcgtgaagttctgatcttatactcggctctaagtaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatcaaatcccatcatatggtcatcgtgaagttctgatcttatactcggctctaagtaca 800
Query: 601 tgtg 604
||||
Sbjct: 801 tgtg 804
>gnl|LJGI|TC62590 similar to UniRef100_A7NZG2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (29%)
Length = 808
Score = 803 bits (405), Expect = 0.0
Identities = 408/409 (99%)
Strand = Plus / Plus
Query: 861 agttgcaatttgtacttgtcatgaagaggctaagaccggagggggatacacttgtccaag 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttgcaatttgtacttgtcatgaagaggctaagaccggagggggatacacttgtccaag 60
Query: 921 atgcaaagttcgtgtctgtgagcttcctactgaatgtcgcgtctgtggattaacccttat 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgcaaagttcgtgtctgtgagcttcctactgaatgtcgcgtctgtggattaacccttat 120
Query: 981 ttcttcaccccatttggcaaggtcatatcatcatctctttcctatagtgccatttgatga 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttcaccccatttggcaaggtcatatcatcatctctttcctatagtgccatttgatga 180
Query: 1041 aatctctccatcgtctcgaaatgatccaagccacagtttctccaatacttgttttggttg 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctctccatcgtctcgaaatgatccaagccacagtttctccaatacttgttttggttg 240
Query: 1101 tcaacaaagtcttcttagtcagggaaacgtgcctggaatttcggttacttgcccaaaatg 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaacaaagtcttcttagtcagggaaacgtgcctggaatttcggttacttgcccaaaatg 300
Query: 1161 caaacaacaattctgccttgattgcgacatctacattcatgagagcttacataattgccc 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaacaacaattctgccttgattgcgacatctacattcatgagagcttacataattgccc 360
Query: 1221 aggctgtgagagtttcaggcattctacgtcagtaactgctgcccaatga 1269
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 aggctgtgagagtttcaggcattttacgtcagtaactgctgcccaatga 409
>gnl|LJGI|FS359677 similar to UniRef100_A7NZG2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (9%)
Length = 786
Score = 291 bits (147), Expect = 5e-78
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 1123 ggaaacgtgcctggaatttcggttacttgcccaaaatgcaaacaacaattctgccttgat 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaaacgtgcctggaatttcggttacttgcccaaaatgcaaacaacaattctgccttgat 398
Query: 1183 tgcgacatctacattcatgagagcttacataattgcccaggctgtgagagtttcaggcat 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgcgacatctacattcatgagagcttacataattgcccaggctgtgagagtttcaggcat 338
Query: 1243 tctacgtcagtaactgctgcccaatga 1269
|||||||||||||||||||||||||||
Sbjct: 337 tctacgtcagtaactgctgcccaatga 311