Miyakogusa Predicted Gene
- Lj1g3v4104770.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4104770.1 tr|A2Q4K2|A2Q4K2_MEDTR DNA repair protein RAD5
OS=Medicago truncatula GN=MTR_7g089190 PE=4 SV=1,66.71,0,seg,NULL;
ZF_RING_1,Zinc finger, RING-type, conserved site; no description,NULL;
no description,Zinc,CUFF.31927.1
(2433 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64078 similar to UniRef100_A2Q4K2 Cluster: SNF2-relat... 2228 0.0
gnl|LJGI|FS329297 similar to UniRef100_A2Q4K2 Cluster: SNF2-rela... 1174 0.0
>gnl|LJGI|TC64078 similar to UniRef100_A2Q4K2 Cluster: SNF2-related; Zinc finger,
RING-type; ATP-requiring DNA helicase RecQ; n=1; Medicago
truncatula|Rep: SNF2-related; Zinc finger, RING-type;
ATP-requiring DNA helicase RecQ - Medicago truncatula
(Barrel medic), partial (40%)
Length = 1235
Score = 2228 bits (1124), Expect = 0.0
Identities = 1136/1140 (99%)
Strand = Plus / Plus
Query: 1294 tattggcagagcttggtgcaaaggcctcttagtcagggcaatgcgagagggttaaatcgc 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tattggcagagcttggtgcaaaggcctcttagtcagggcaatgcgagagggttaaatcgc 61
Query: 1354 ttgcaggttttgatggcagcgatttcattacgaagaacaaaagagatgtcatcagtgggg 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttgcaggttttgatggcagcgatttcattacgaagaacaaaagagatgtcatcagtgggg 121
Query: 1414 ctgccactaaaaaccatagagactcatcatattgaactttctgctgaagaacgtaaaatg 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctgccactaaaaaccatagagactcatcatattgaactttctgctgaagaacgtaaaatg 181
Query: 1474 tatgatgaggtgaaggaggaagcagatgcgattttgttacgttatggcagtagtgagggt 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tatgatgaggtgaaggaggaagcagatgcgattttgttacgttatggcagtagtgagggt 241
Query: 1534 ctagtgtacagttattctgctgtaataagtatgattctaagacttcggcaaatctgtact 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctagtgtacagttattctgctgtaataagtatgattctaagacttcggcaaatctgtact 301
Query: 1594 gattttgctttgtgcccttcagatttcaagtcgcatctactcccttcaagtgatattgaa 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gattttgctttgtgcccttcagatttcaagtcgcatctactcccttcaagtgatattgaa 361
Query: 1654 gatgtttccaagaaccctgagttgctgcaaacattagttagaattctgcaagatggtgaa 1713
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gatgtttccaagaaccccgagttgctgcaaacattagttagaattctgcaagatggtgaa 421
Query: 1714 gattttgaatgtccaatttgtatatctcctccaactgatatagtaattacatgctgtgct 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gattttgaatgtccaatttgtatatctcctccaactgatatagtaattacatgctgtgct 481
Query: 1774 cacattttctgccaaccttgtattctgaaaactctacaacgcagcaatccccgttgtcct 1833
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catattttctgccaaccttttattctgaaaactctacaacgcagcaatccccgttgtcct 541
Query: 1834 ctttgtcgtcggtccctctccgaatctgacttgttctcagctcctcctgaattgtctaat 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctttgtcgtcggtccctctccgaatctgacttgttctcagctcctcctgaattgtctaat 601
Query: 1894 gtcgataccactgaactgtgctcatcagaaaaagggttatctaccaaagcttttactctt 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtcgataccactgaactgtgctcatcagaaaaagggttatctaccaaagcttttactctt 661
Query: 1954 ataaaacttcttacagagtcgagagatcaggatccaactgcaaaatcagttgtattttca 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ataaaacttcttacagagtcgagagatcaggatccaactgcaaaatcagttgtattttca 721
Query: 2014 caattcagtaagttgttgctgttgttggaagaacctctaaaagcagctggtttcaagact 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 caattcagtaagttgttgctgttgttggaagaacctctaaaagcagctggtttcaagact 781
Query: 2074 ttgcgtctcgatgggacaatgaatgctaaacagagagctaatgttattgagcagtttcaa 2133
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 782 ttgcgtctcgatgggacaatgaatgctaaacagagagctaatgttattgagcggtttcaa 841
Query: 2134 ggctcagaaaaggatggaccaatggttctccttgcaagtctcagaacttcaagtacaggt 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggctcagaaaaggatggaccaatggttctccttgcaagtctcagaacttcaagtacaggt 901
Query: 2194 ataaatctcactgctgcgtctagagtgtacttaatggagccatggtggaacacaggagtt 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ataaatctcactgctgcgtctagagtgtacttaatggagccatggtggaacacaggagtt 961
Query: 2254 gaggaacaggcaatcgatcgcgttcaccgcattggacagaaagaggctgtgaaggttgtt 2313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gaggaacaggcaatcgatcgcgttcaccgcattggacagaaagaggctgtgaaggttgtt 1021
Query: 2314 agattgatagctcagaacagcattgaagagaaaattttgatgttacgagaaaggaagcaa 2373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 agattgatagctcagaacagcattgaagagaaaattttgatgttacgagaaaggaagcaa 1081
Query: 2374 gcaagaaaaggttttgggatgggtatggatatggtagtagatgatctgcgtttccttttg 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 gcaagaaaaggttttgggatgggtatggatatggtagtagatgatctgcgtttccttttg 1141
>gnl|LJGI|FS329297 similar to UniRef100_A2Q4K2 Cluster: SNF2-related; Zinc finger,
RING-type; ATP-requiring DNA helicase RecQ; n=1;
Medicago truncatula|Rep: SNF2-related; Zinc finger,
RING-type; ATP-requiring DNA helicase RecQ - Medicago
truncatula (Barrel medic), partial (19%)
Length = 734
Score = 1174 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Plus
Query: 1 atggattccgaagaggactcatcacagcagcagcaccacctttcacagtgggacacctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggattccgaagaggactcatcacagcagcagcaccacctttcacagtgggacacctac 194
Query: 61 ctagtcggcttcgtcaccgccaacatcgtcggcctcaaatactacgccggcaccatcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctagtcggcttcgtcaccgccaacatcgtcggcctcaaatactacgccggcaccatcagc 254
Query: 121 ggccgcgagttcgtcggcctcatccgtgaaccccacaacgcctacgacccaaacgccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggccgcgagttcgtcggcctcatccgtgaaccccacaacgcctacgacccaaacgccatc 314
Query: 181 aaagtcctcaacacccgcgccctccaagtcggccacatcgaacgccccgccgccgctgtc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 315 aaagtcctcaacacccgcgccctccaagtcggccacatcgaacgcgccgccgccgctgtc 374
Query: 241 ctcgctcctctcatcgactcccacctcatcaccgtcgagggaatcgtccctaaccctcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctcgctcctctcatcgactcccacctcatcaccgtcgagggaatcgtccctaaccctcgc 434
Query: 301 tccgccgccaataaattccgcatcccctgccaggtccatgtcttcgctcactcctccgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tccgccgccaataaattccgcatcccctgccaggtccatgtcttcgctcactcctccgcc 494
Query: 361 ttcgccgccgtcaccgacgccttcgccaactcccctctccacctcatttcccaatctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcgccgccgtcaccgacgccttcgccaactcccctctccacctcatttcccaatctgat 554
Query: 421 ccctccttcacactatccgactctattgctgtcaaagaaacccgcgctgagaacaagttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccctccttcacactatccgactctattgctgtcaaagaaacccgcgctgagaacaagttc 614
Query: 481 aaatcgttagacgctgtgttcaaattcgtcgaggagaatgtgaagaatcgtgttctacaa 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaatcgttagacgctgtgttcagattcgtcgaggagaatgtgaagaatcgtgttctacaa 674
Query: 541 ccgctgcaacctccgcccaatgtgattaaaactgagcttctgcagcatcagaaggaagcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccgctgcaacctccgcccaatgtgattaaaactgagcttctgcagcatcagaaggaagcc 734