Miyakogusa Predicted Gene
- Lj1g3v4093500.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4093500.2 Non Chatacterized Hit- tr|A5AUM8|A5AUM8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.77,2e-18,seg,NULL; ELONGIN-A-RELATED,NULL; TRANSCRIPTION
ELONGATION FACTOR B POLYPEPTIDE 3,NULL; TFIIS_N,Tran,CUFF.31915.2
(1341 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61522 similar to UniRef100_A7PTA6 Cluster: Chromosome... 886 0.0
gnl|LJGI|TC63982 similar to UniRef100_A7PTA6 Cluster: Chromosome... 519 e-146
gnl|LJGI|FS323161 60 4e-08
>gnl|LJGI|TC61522 similar to UniRef100_A7PTA6 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 873
Score = 886 bits (447), Expect = 0.0
Identities = 491/513 (95%)
Strand = Plus / Plus
Query: 1 atgaagtctgggtcactggatcagtggaggagttactttcggtctgcgaattcggacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgaagtctgggtcactggatcagtggaggagttactttcggtctgcgaattcggacata 420
Query: 61 tttgatataattgatcatgcgatcattgtggctgcttctgattgccccaaggagttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttgatataattgatcatgcgatcattgtggctgcttctgattgccccaaggagttcaga 480
Query: 121 ttgagaagggattggattgcagagaggctcttctcttgcaagttgactcgttgtttgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgagaagggattggattgcagagaggctcttctcttgcaagttgactcgttgtttgggg 540
Query: 181 tgtgatcgggtggagttagctgttgctggtgatggtggtgaannnnnnnnnnnnnnnnnn 240
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtgatcgggtggagttagctgttgctggtgatggtggtgaagatgatgatgatcatgat 600
Query: 241 nnnngaggttgtaagattgaagctggggcaagcaaagagagcaaggctaatgatgctagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatggaggttgtaagattgaagctggggcaagcaaagagagcaaggctaatgatgctagt 660
Query: 301 ggagatgatcatggagagatgaacatgaacccggatagcatttatagctttggtgaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggagatgatcatggagagatgaacatgaacccggatagcatttatagctttggtgaagct 720
Query: 361 gaggctttgactgatgagattgaagaagagtctcagtatcttgaagaggttttgaggatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaggctttgactgatgagattgaagaagagtctcagtatcttgaagaggttttgaggatc 780
Query: 421 aaagaacttctgcttagctctgaagaagcgagtgactctgtgatatttgattcactgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aaagaacttctgcttagctctgaagaagcgagtgactctgtgatatttgattcactgagg 840
Query: 481 agacttcagctgatggaactcactgtggatcgt 513
|||||||||||||||||||||||||||||||||
Sbjct: 841 agacttcagctgatggaactcactgtggatcgt 873
>gnl|LJGI|TC63982 similar to UniRef100_A7PTA6 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 751
Score = 519 bits (262), Expect = e-146
Identities = 265/266 (99%)
Strand = Plus / Plus
Query: 1076 agatggcagtgcagcaaaaaatagagaacaatacaatcacaaggaggcctcccattgttc 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agatggcagtgcagcaaaaaatagagaacaatacaatcacaaggaggcctcccattgttc 61
Query: 1136 agcaaaataaatctaaatgttcagatgatgctgcgaagctagaagccactaagaggaaac 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agcaaaataaatctaaatgttcagatgatgctgcgaagctagaagccactaagaggaaac 121
Query: 1196 ttcaagagcgctatcaacaagctgaaaatgctaagaggcagagaactatacaagttatgg 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttcaagagcgctatcaacaagctgaaaatgctaagaggcagagaactatacaagttatgg 181
Query: 1256 aattgaatgatcttcccaagcaagtgattgcacaccggaatcctcatttcaaatctggaa 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 182 aattgaatgatcttcccaagcaagcgattgcacaccggaatcctcatttcaaatctggaa 241
Query: 1316 atcataggcaatggggacgaaaatag 1341
||||||||||||||||||||||||||
Sbjct: 242 atcataggcaatggggacgaaaatag 267
>gnl|LJGI|FS323161
Length = 676
Score = 60.0 bits (30), Expect = 4e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 atgaagtctgggtcactggatcagtggagg 30
||||||||||||||||||||||||||||||
Sbjct: 647 atgaagtctgggtcactggatcagtggagg 676