Miyakogusa Predicted Gene
- Lj1g3v4093200.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4093200.1 tr|D7MMT8|D7MMT8_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.16,1e-18,R3H DOMAIN CONTAINING PROTEIN,R3H
domain-containing protein, viridiplantae; CAMP-REGULATED
PHOSPHOPR,CUFF.31981.1
(1098 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61726 similar to UniRef100_A2Q6F7 Cluster: Single-str... 1287 0.0
gnl|LJGI|TC69792 homologue to UniRef100_A2Q6F7 Cluster: Single-s... 672 0.0
gnl|LJGI|AW164074 weakly similar to UniRef100_A2Q6F7 Cluster: Si... 270 2e-71
>gnl|LJGI|TC61726 similar to UniRef100_A2Q6F7 Cluster: Single-stranded nucleic acid
binding R3H; n=1; Medicago truncatula|Rep:
Single-stranded nucleic acid binding R3H - Medicago
truncatula (Barrel medic), partial (60%)
Length = 912
Score = 1287 bits (649), Expect = 0.0
Identities = 649/649 (100%)
Strand = Plus / Plus
Query: 450 tgatggcaatggttctggggtgaaaggaaaccatctgaggagtgtggaagagaggaagga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgatggcaatggttctggggtgaaaggaaaccatctgaggagtgtggaagagaggaagga 61
Query: 510 agaatatgatcgggcacgagcacgtatctttagtggctctagaagctccgattcaggtga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agaatatgatcgggcacgagcacgtatctttagtggctctagaagctccgattcaggtga 121
Query: 570 taccttatctgtggtccccatggatgggcaaagttcttttatgagcagggatgagtatga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 taccttatctgtggtccccatggatgggcaaagttcttttatgagcagggatgagtatga 181
Query: 630 gactagaaaaaaccccatggctgattcagaaagaatcatgagtgtcaaggatgctaatgc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gactagaaaaaaccccatggctgattcagaaagaatcatgagtgtcaaggatgctaatgc 241
Query: 690 tactcgagttgccattttcagagacagggaaaaggaccgaagtgatccagattatgaccg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tactcgagttgccattttcagagacagggaaaaggaccgaagtgatccagattatgaccg 301
Query: 750 cagctatggaaggtatgctaggagtatgtcaatgcctgccgttaacttggtgccttttaa 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagctatggaaggtatgctaggagtatgtcaatgcctgccgttaacttggtgccttttaa 361
Query: 810 tgtgcaaattacccaaccttcatttgctcaatatgacactactttcaatcagttggttca 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgtgcaaattacccaaccttcatttgctcaatatgacactactttcaatcagttggttca 421
Query: 870 gatgccaccaactcaggcttcacttggctatatacctccttcaagtccgatcatgagccc 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gatgccaccaactcaggcttcacttggctatatacctccttcaagtccgatcatgagccc 481
Query: 930 tttctgtaatgggggattgaatcagacacctagggatcctgcttacctacagtggccaag 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttctgtaatgggggattgaatcagacacctagggatcctgcttacctacagtggccaag 541
Query: 990 tcctactataatgtatgcacattcatatgaccaatttagacatgctgtttaccaggctcc 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcctactataatgtatgcacattcatatgaccaatttagacatgctgtttaccaggctcc 601
Query: 1050 atttggtcaacagcccttgagctttgactattcacagaactactagatg 1098
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atttggtcaacagcccttgagctttgactattcacagaactactagatg 650
>gnl|LJGI|TC69792 homologue to UniRef100_A2Q6F7 Cluster: Single-stranded nucleic acid
binding R3H; n=1; Medicago truncatula|Rep:
Single-stranded nucleic acid binding R3H - Medicago
truncatula (Barrel medic), partial (28%)
Length = 754
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 34 acctgtgtccccaacgatgctgcagcttctgggttcaaagacaaggagtcaatggttgac 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acctgtgtccccaacgatgctgcagcttctgggttcaaagacaaggagtcaatggttgac 475
Query: 94 cctttcttggtcgaggctctccagaaccctcgtcatcgtctcaccattttgcggatggag 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cctttcttggtcgaggctctccagaaccctcgtcatcgtctcaccattttgcggatggag 535
Query: 154 ctggatattcagagctttatgaataatgctgatcagcagcattttgagttccagcatttc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctggatattcagagctttatgaataatgctgatcagcagcattttgagttccagcatttc 595
Query: 214 ccttcttcctatctccgactggctgcacatcgtgttgctcaacactatggtatgcaaaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccttcttcctatctccgactggctgcacatcgtgttgctcaacactatggtatgcaaaca 655
Query: 274 atggttcaggattgtggcttagatggccagggaagtaaaattctggtgaggaagttaccg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atggttcaggattgtggcttagatggccagggaagtaaaattctggtgaggaagttaccg 715
Query: 334 gaaagcaaatatcctgcagtttgtttatctgaaatacct 372
|||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaaagcaaatatcctgcagtttgtttatctgaaatacct 754
>gnl|LJGI|AW164074 weakly similar to UniRef100_A2Q6F7 Cluster: Single-stranded nucleic
acid binding R3H; n=1; Medicago truncatula|Rep:
Single-stranded nucleic acid binding R3H - Medicago
truncatula (Barrel medic), partial (15%)
Length = 157
Score = 270 bits (136), Expect = 2e-71
Identities = 150/157 (95%)
Strand = Plus / Plus
Query: 357 tttatctgaaatacctgccaaacaggtggaaaatgataaatgtttccagnnnnnnnttgt 416
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 tttatctgaaatacctgccaaacaggtggaaaatgataaatgtttccagaaaaaaattgt 60
Query: 417 aattagacctaggcctggtaaagctggtttgaatgatggcaatggttctggggtgaaagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattagacctaggcctggtaaagctggtttgaatgatggcaatggttctggggtgaaagg 120
Query: 477 aaaccatctgaggagtgtggaagagaggaaggaagaa 513
|||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaccatctgaggagtgtggaagagaggaaggaagaa 157