Miyakogusa Predicted Gene
- Lj1g3v3975590.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3975590.1 Non Chatacterized Hit- tr|I3SA27|I3SA27_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.69,0,RRM,RNA
recognition motif domain; no description,Nucleotide-binding,
alpha-beta plait; RNA-binding d,CUFF.31685.1
(819 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58911 similar to UniRef100_Q2HVL4 Cluster: RNA-bindin... 1624 0.0
gnl|LJGI|TC66403 similar to UniRef100_Q2HVL4 Cluster: RNA-bindin... 1100 0.0
gnl|LJGI|BP049130 similar to UniRef100_Q2HVL4 Cluster: RNA-bindi... 119 3e-26
gnl|LJGI|BP047110 similar to UniRef100_Q3AAS5 Cluster: Spore mat... 52 6e-06
>gnl|LJGI|TC58911 similar to UniRef100_Q2HVL4 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (97%)
Length = 1390
Score = 1624 bits (819), Expect = 0.0
Identities = 819/819 (100%)
Strand = Plus / Plus
Query: 1 atgcagactaggactgttcaggtgaagcaggtttcagatctagttggtgaaagagagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atgcagactaggactgttcaggtgaagcaggtttcagatctagttggtgaaagagagatt 196
Query: 61 catgagtttttctctttttctggtgaaatcgagcacgttgagatcctcagtgaatatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 catgagtttttctctttttctggtgaaatcgagcacgttgagatcctcagtgaatatggg 256
Query: 121 aaatcaaagactgcatttgtgacatttaaagatgccaaagcgcttgaaattgcattgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatcaaagactgcatttgtgacatttaaagatgccaaagcgcttgaaattgcattgttg 316
Query: 181 ttatcgggagcaaccatagtagaccagattgtgagtataactccagttgagaactatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttatcgggagcaaccatagtagaccagattgtgagtataactccagttgagaactatgta 376
Query: 241 ccaaatcgtgagatgctggaagtaacggtggtggaaaatgctataaatgttgctcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccaaatcgtgagatgctggaagtaacggtggtggaaaatgctataaatgttgctcctgaa 436
Query: 301 catgtctcgttgaatattgaggaggagaaacccagctcacccagctctgtcaatggaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catgtctcgttgaatattgaggaggagaaacccagctcacccagctctgtcaatggaaga 496
Query: 361 gtgtatcttagtagagcacaagttgcagttagtagtatgctggcaaaaggttctgcaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtgtatcttagtagagcacaagttgcagttagtagtatgctggcaaaaggttctgcaata 556
Query: 421 aagcaagatgccgtaaacaaagctaaagcatttgatgaaaagcatcagttgacttctaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagcaagatgccgtaaacaaagctaaagcatttgatgaaaagcatcagttgacttctaat 616
Query: 481 gcatctgcaaaggtgatttcttttgacaagagagttggattgacagagaaattgacagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcatctgcaaaggtgatttcttttgacaagagagttggattgacagagaaattgacagtt 676
Query: 541 ggcctttctgcaatgaatgagaaagtgaagtctgtggatcagaggcttcatgtttctgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggcctttctgcaatgaatgagaaagtgaagtctgtggatcagaggcttcatgtttctgat 736
Query: 601 aaaacaatggcagctatatttgctgctgaaaggaagttgaatgatactggatcagctgtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaacaatggcagctatatttgctgctgaaaggaagttgaatgatactggatcagctgtc 796
Query: 661 aaaacaagcagatatgtgactgctggaacatcatggttaaatggagcttttagcaaggtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaaacaagcagatatgtgactgctggaacatcatggttaaatggagcttttagcaaggtg 856
Query: 721 gcaaaggttggacatgttgctagtactaggactagagagaagtttaatatggctgtttca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gcaaaggttggacatgttgctagtactaggactagagagaagtttaatatggctgtttca 916
Query: 781 aacttgacagcaaaggattctccagtggctgctgtatag 819
|||||||||||||||||||||||||||||||||||||||
Sbjct: 917 aacttgacagcaaaggattctccagtggctgctgtatag 955
>gnl|LJGI|TC66403 similar to UniRef100_Q2HVL4 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (66%)
Length = 764
Score = 1100 bits (555), Expect = 0.0
Identities = 558/559 (99%)
Strand = Plus / Plus
Query: 1 atgcagactaggactgttcaggtgaagcaggtttcagatctagttggtgaaagagagatt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 atgcagactaggactgttcaggtgaagcaggtttcagatctagctggtgaaagagagatt 265
Query: 61 catgagtttttctctttttctggtgaaatcgagcacgttgagatcctcagtgaatatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catgagtttttctctttttctggtgaaatcgagcacgttgagatcctcagtgaatatggg 325
Query: 121 aaatcaaagactgcatttgtgacatttaaagatgccaaagcgcttgaaattgcattgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatcaaagactgcatttgtgacatttaaagatgccaaagcgcttgaaattgcattgttg 385
Query: 181 ttatcgggagcaaccatagtagaccagattgtgagtataactccagttgagaactatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatcgggagcaaccatagtagaccagattgtgagtataactccagttgagaactatgta 445
Query: 241 ccaaatcgtgagatgctggaagtaacggtggtggaaaatgctataaatgttgctcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccaaatcgtgagatgctggaagtaacggtggtggaaaatgctataaatgttgctcctgaa 505
Query: 301 catgtctcgttgaatattgaggaggagaaacccagctcacccagctctgtcaatggaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catgtctcgttgaatattgaggaggagaaacccagctcacccagctctgtcaatggaaga 565
Query: 361 gtgtatcttagtagagcacaagttgcagttagtagtatgctggcaaaaggttctgcaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgtatcttagtagagcacaagttgcagttagtagtatgctggcaaaaggttctgcaata 625
Query: 421 aagcaagatgccgtaaacaaagctaaagcatttgatgaaaagcatcagttgacttctaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagcaagatgccgtaaacaaagctaaagcatttgatgaaaagcatcagttgacttctaat 685
Query: 481 gcatctgcaaaggtgatttcttttgacaagagagttggattgacagagaaattgacagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcatctgcaaaggtgatttcttttgacaagagagttggattgacagagaaattgacagtt 745
Query: 541 ggcctttctgcaatgaatg 559
|||||||||||||||||||
Sbjct: 746 ggcctttctgcaatgaatg 764
>gnl|LJGI|BP049130 similar to UniRef100_Q2HVL4 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (15%)
Length = 532
Score = 119 bits (60), Expect = 3e-26
Identities = 99/111 (89%), Gaps = 2/111 (1%)
Strand = Plus / Minus
Query: 556 aatgagaaagtgaagtctgtggatcagaggcttcatgtttctgataaaacaatggcagct 615
|||||||| |||||||||| ||||||||||||||||||| | || | ||| |||||||
Sbjct: 532 aatgagaaggtgaagtctg--gatcagaggcttcatgtttttcatcacacagtggcagca 475
Query: 616 atatttgctgctgaaaggaagttgaatgatactggatcagctgtcaaaaca 666
|| |||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 474 atttttgatgctgaaaggaagttgaatgatactgtatcagctgtcaaaaca 424
>gnl|LJGI|BP047110 similar to UniRef100_Q3AAS5 Cluster: Spore maturation protein B;
n=1; Carboxydothermus hydrogenoformans Z-2901|Rep:
Spore, partial (10%)
Length = 580
Score = 52.0 bits (26), Expect = 6e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 794 aggattctccagtggctgctgtatag 819
||||||||||||||||||||||||||
Sbjct: 452 aggattctccagtggctgctgtatag 427