Miyakogusa Predicted Gene
- Lj1g3v3975340.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3975340.1 Non Chatacterized Hit- tr|A5XEM2|A5XEM2_MEDTR
Putative RNA binding protein OS=Medicago truncatula
GN,89.52,0,HEAT_2,NULL; HEAT_REPEAT,HEAT, type 2; ARM
repeat,Armadillo-type fold; no description,Armadillo-like,CUFF.31654.1
(2139 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV410177 homologue to UniRef100_A2Q1G7 Cluster: HEAT; n... 799 0.0
gnl|LJGI|DC598107 similar to UniRef100_A2Q1G2 Cluster: Armadillo... 484 e-135
gnl|LJGI|FS342864 homologue to UniRef100_A7P079 Cluster: Chromos... 260 3e-68
gnl|LJGI|TC71353 similar to UniRef100_A7P079 Cluster: Chromosome... 123 5e-27
gnl|LJGI|BP063049 similar to UniRef100_A7P079 Cluster: Chromosom... 60 6e-08
>gnl|LJGI|AV410177 homologue to UniRef100_A2Q1G7 Cluster: HEAT; n=2; Medicago
truncatula|Rep: HEAT - Medicago truncatula (Barrel
medic), partial (15%)
Length = 403
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Plus
Query: 841 ccttcccttgaggaaggaacgcgccatttagctattgagtttgtcgtgacacttgctgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttcccttgaggaaggaacgcgccatttagctattgagtttgtcgtgacacttgctgag 60
Query: 901 gcgagggagcgcgccccggggatgatgaggaagctgccgcagtttatccagaggctgttt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgagggagcgcgccccggggatgatgaggaagctgccgcagtttatccagaggctgttt 120
Query: 961 ggtgtgctgatgaatttgttgctggatattgaagatgagccggcttggcacgccgccgag 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgtgctgatgaatttgttgctggatattgaagatgagccggcttggcacgccgccgag 180
Query: 1021 actgaggacgaggttgctggtgagaccagtaattatggatttgggcaggagtgtttggat 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgaggacgaggttgctggtgagaccagtaattatggatttgggcaggagtgtttggat 240
Query: 1081 agactttcgatttctttgggtgggaacacgatagtgccagttgcttcggagttgttgcct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agactttcgatttctttgggtgggaacacgatagtgccagttgcttcggagttgttgcct 300
Query: 1141 gcttacttggctgctcctgaatggcaaaagcatcatgctgcactcattgcacttgcacag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcttacttggctgctcctgaatggcaaaagcatcatgctgcactcattgcacttgcacag 360
Query: 1201 attgcagagggttgttcaaaggtgatgataaagaatctggagc 1243
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgcagagggttgttcaaaggtgatgataaagaatctggagc 403
>gnl|LJGI|DC598107 similar to UniRef100_A2Q1G2 Cluster: Armadillo-like helical; n=1;
Medicago truncatula|Rep: Armadillo-like helical -
Medicago truncatula (Barrel medic), partial (68%)
Length = 588
Score = 484 bits (244), Expect = e-135
Identities = 250/252 (99%)
Strand = Plus / Plus
Query: 1 atggatccaaaccaagtagctctcatcctcggccctgattcatctcatttagaatcccta 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 95 atggatccaaaccaagtagctctcatcctcggcccagattcatctcatttagaatcccta 154
Query: 61 atttcaaacttcatctccaccggcaacgagcaacgttctcaggccgaaactctcttcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atttcaaacttcatctccaccggcaacgagcaacgttctcaggccgaaactctcttcaat 214
Query: 121 ctctgcaaacaaacccaccccgattccctcatcctccgtctcgctcagcttctccactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctctgcaaacaaacccaccccgattccctcatcctccgtctcgctcagcttctccactct 274
Query: 181 tcccccaaccccgaaacccgaaccatggccaccatcctcctccgccgccacctcacgcgc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 tcccccaaccccgaaacccgaaccatggccaccattctcctccgccgccacctcacgcgc 334
Query: 241 caccacgatgat 252
||||||||||||
Sbjct: 335 caccacgatgat 346
Score = 335 bits (169), Expect = 7e-91
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 326 gcgagccgcagaagtctatctccaagaagctatgcgacaccgtttctgaacttgcctctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcgagccgcagaagtctatctccaagaagctatgcgacaccgtttctgaacttgcctctg 479
Query: 386 ctttgctccctgatgaccccgccgcctggccggagctgctgccgcttttgttccagtggg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctttgctccctgatgaccccgccgcctggccggagctgctgccgcttttgttccagtggg 539
Query: 446 tcacctcgccggaccccaggctgcaggaaattgcgctgcttgtgtttgc 494
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcacctcgccggaccccaggctgcaggaaattgcgctgcttgtgtttgc 588
>gnl|LJGI|FS342864 homologue to UniRef100_A7P079 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (22%)
Length = 735
Score = 260 bits (131), Expect = 3e-68
Identities = 542/679 (79%)
Strand = Plus / Plus
Query: 1027 gacgaggttgctggtgagaccagtaattatggatttgggcaggagtgtttggatagactt 1086
||||||| ||||||||| || || |||||| | |||| || ||||| |||||||| |||
Sbjct: 57 gacgaggatgctggtgaaacgagcaattatagtgttggacaagagtgcttggataggctt 116
Query: 1087 tcgatttctttgggtgggaacacgatagtgccagttgcttcggagttgttgcctgcttac 1146
| || || |||||||| || || || || || |||||||| || |||||||||||
Sbjct: 117 gctatatcattgggtggaaataccattgttcctgttgcttctgaacaattgcctgcttat 176
Query: 1147 ttggctgctcctgaatggcaaaagcatcatgctgcactcattgcacttgcacagattgca 1206
|| |||||| |||| ||||| || | ||||||||||| ||||| || || || || |||
Sbjct: 177 ttagctgctactgagtggcagaatcgccatgctgcactaattgcgctcgcccaaatagca 236
Query: 1207 gagggttgttcaaaggtgatgataaagaatctggagcaagtattgtcaatgattttaaat 1266
|||||||| |||||||||||| |||| ||| |||||||||| || | ||| | | ||
Sbjct: 237 gagggttgctcaaaggtgatggtaaaaaatttggagcaagtggtggctatggtactgaac 296
Query: 1267 tcatttcacgatcctcaccctcgagtgagatgggcagccataaatgcaattgggcaattg 1326
||||||| |||| || || || || ||||||||||| || ||||||||||||||| |
Sbjct: 297 tcatttccagatcaacatccccgtgtaagatgggcagcaatcaatgcaattgggcaactc 356
Query: 1327 tccacagacttggggccagacttgcaggttaaatatcaccacttagtgctgcctgcatta 1386
||||| || ||||| ||||| ||||| |||||||| || || ||| |||| ||| ||
Sbjct: 357 tccactgatttgggtccagatttgcaagttaaataccatcaaggggtgttgccagcacta 416
Query: 1387 gctggagccatggacgattttcaaaatcccagagtacaggctcatgtggcttctgccgtg 1446
||| |||||||| ||||||||||| || | || ||||| |||| |||||||| |||
Sbjct: 417 gcttctgccatggatgattttcaaaaccctcgtgtgcaggcacatgctgcttctgcagtg 476
Query: 1447 ctgaacttcactgaaaattgtaccccagatatcctaacaccttatttagatgggattgtg 1506
|| ||||||||||| |||||||| || ||||| ||||||| ||||| ||||| |||||
Sbjct: 477 ctcaacttcactgagaattgtacgcctgatattttaacaccatatttggatggaattgtt 536
Query: 1507 agcaaacttctcgtacttctgcagaatgggaagcaaatggttcaagaaggggcattgaca 1566
|| ||| | || ||||| || |||||||| ||||||||||| ||||| || || || ||
Sbjct: 537 agtaaattgcttgtactccttcagaatggtaagcaaatggtgcaagagggtgctttaact 596
Query: 1567 gcattagcatcagttgctgattcttcacaggagcaatttcagaaatactatgatgctgtt 1626
|| || ||||||||||||||||| || ||||| || || || |||||||||||||| ||
Sbjct: 597 gctttggcatcagttgctgattcatctcaggaacacttccaaaaatactatgatgccgtc 656
Query: 1627 atgccatacttaaaagctattttgatgaatgcaaatgataagacaaatcgtatgcttcgt 1686
|||||||| | || ||||| ||| ||||||||| ||||||| | || ||||||||||||
Sbjct: 657 atgccatatcttaaggctatattggtgaatgcaactgataagtctaaccgtatgcttcgt 716
Query: 1687 gccaaagcaatggagtgca 1705
|||||| | ||||||||||
Sbjct: 717 gccaaatctatggagtgca 735
>gnl|LJGI|TC71353 similar to UniRef100_A7P079 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (30%)
Length = 1071
Score = 123 bits (62), Expect = 5e-27
Identities = 230/286 (80%)
Strand = Plus / Plus
Query: 662 ggttgcaggatttgctgcccctcatgatgcagacattgacagaggcactgaattctggtc 721
|||| ||||| |||||||| |||||||| ||| | || ||||| |||||||| || |
Sbjct: 735 ggttccaggacttgctgcctgccatgatgcggacgctcacggaggcgctgaattccggcc 794
Query: 722 aggaggcaactgcgcaggaggctctcgagctccttattgagcttgcaggaaccgagccta 781
||||||| |||||||||||||| || ||| | || |||||||| || || || ||||| |
Sbjct: 795 aggaggctactgcgcaggaggcgcttgagttgctcattgagctcgcgggcacggagccga 854
Query: 782 ggttcctgcggaggcagattgtcgatgttgttggctccatgctgcaggttgctgaggccc 841
|||| || |||||||||||||| ||||| || || | ||||| ||| |||| |||||
Sbjct: 855 ggtttctccggaggcagattgttgatgtggtgggggctatgcttcagattgcggaggctg 914
Query: 842 cttcccttgaggaaggaacgcgccatttagctattgagtttgtcgtgacacttgctgagg 901
|| | |||||||||||| | ||| | || ||||| ||||| | || ||||||||||
Sbjct: 915 agtcgttggaggaaggaacgaggcatctggcaattgaatttgttattactcttgctgagg 974
Query: 902 cgagggagcgcgccccggggatgatgaggaagctgccgcagtttat 947
| |||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 975 ctagggagcgtgccccgggtatgatgaggaagctgccacagtttat 1020
Score = 60.0 bits (30), Expect = 6e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 94 cgttctcaggccgaaactctcttcaatctctgcaaacaaacc 135
|||||||||||||| | ||||||||||||||||||||||||
Sbjct: 176 cgttctcaggccgaggcgctcttcaatctctgcaaacaaacc 217
>gnl|LJGI|BP063049 similar to UniRef100_A7P079 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 522
Score = 60.0 bits (30), Expect = 6e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 94 cgttctcaggccgaaactctcttcaatctctgcaaacaaacc 135
|||||||||||||| | ||||||||||||||||||||||||
Sbjct: 269 cgttctcaggccgaggcgctcttcaatctctgcaaacaaacc 310