Miyakogusa Predicted Gene

Lj1g3v3959320.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3959320.1 Non Chatacterized Hit- tr|D8S593|D8S593_SELML
Putative uncharacterized protein OS=Selaginella
moelle,38.71,0.0003,seg,NULL,CUFF.31722.1
         (744 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV411182 similar to UniRef100_A2Q5Q7 Cluster: Not CCR4-...   422   e-117

>gnl|LJGI|AV411182 similar to UniRef100_A2Q5Q7 Cluster: Not CCR4-Not complex
           component, N-terminal; tRNA-binding arm; n=1; Medicago
           truncatula|Rep: Not CCR4-Not complex component,
           N-terminal; tRNA-binding arm - Medicago truncatula
           (Barrel medic), partial (11%)
          Length = 417

 Score =  422 bits (213), Expect = e-117
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 526 ccgagtctcagtagtatttctcctgcctcaatacagcagccacccaattctgctcattcc 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   ccgagtctcagtagtatttctcctgcctcaatacagcagccacccaattctgctcattcc 63

                                                                       
Query: 586 ccatccagtcaacagccattgattccgggtgttgctaaagatgcagatgttggcaattct 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ccatccagtcaacagccattgattccgggtgttgctaaagatgcagatgttggcaattct 123

                                                                       
Query: 646 aaggttgaggaacagcagcaacatcagaattatgctgatgagtcaacagcggaatctcct 705
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaggttgaggaacagcagcaacatcagaattatgctgatgagtcaacagcggaatctcct 183

                                            
Query: 706 tctagcaatgggattggcaagaatcttgcaatt 738
           |||||||||||||||||||||||||||||||||
Sbjct: 184 tctagcaatgggattggcaagaatcttgcaatt 216