Miyakogusa Predicted Gene
- Lj1g3v3948260.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3948260.1 tr|Q4RFZ2|Q4RFZ2_TETNG Chromosome undetermined
SCAF15108, whole genome shotgun sequence
OS=Tetraodon,35.86,2e-18,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; SUBFAMILY NOT NAMED,NULL;
UNCHARAC,CUFF.31696.1
(1341 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58563 similar to UniRef100_A7QHK3 Cluster: Chromosome... 1354 0.0
gnl|LJGI|TC58293 similar to UniRef100_A7QHK3 Cluster: Chromosome... 920 0.0
gnl|LJGI|TC69577 homologue to UniRef100_A7QHK2 Cluster: Chromoso... 293 1e-78
>gnl|LJGI|TC58563 similar to UniRef100_A7QHK3 Cluster: Chromosome chr5 scaffold_98,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_98, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (56%)
Length = 786
Score = 1354 bits (683), Expect = 0.0
Identities = 683/683 (100%)
Strand = Plus / Plus
Query: 1 atggctgagagccaatttggatttcaaagcacaggcacaacaatggcagagtcaaatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atggctgagagccaatttggatttcaaagcacaggcacaacaatggcagagtcaaatcct 163
Query: 61 tccgctacccttataatcaagcaccttcctgaagccattccacacgacacactctctcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tccgctacccttataatcaagcaccttcctgaagccattccacacgacacactctctcga 223
Query: 121 ctcttgtcccattacaacgcttcctccgttcgcccgtgctctgctgcaaggttgaggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctcttgtcccattacaacgcttcctccgttcgcccgtgctctgctgcaaggttgaggaat 283
Query: 181 tgtgcttttgtggattttaaaaatgatatgctggcgtctcaagcacagcgtcaactaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgtgcttttgtggattttaaaaatgatatgctggcgtctcaagcacagcgtcaactaaat 343
Query: 241 gggttgagatttcttggcaaagtcttgtcagcagagagagctaacccaattgacaatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gggttgagatttcttggcaaagtcttgtcagcagagagagctaacccaattgacaatggt 403
Query: 301 gaaaaaagtagtggtgctcagcaaggaaaggactctaaaacatcagtggtaaatgtaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaaaaaagtagtggtgctcagcaaggaaaggactctaaaacatcagtggtaaatgtaacc 463
Query: 361 aaatctgttgatgaagatacaaaatcagcaggcctccctactcctcagccaattgctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaatctgttgatgaagatacaaaatcagcaggcctccctactcctcagccaattgctgat 523
Query: 421 agacttggtgttgattatccatttcctcctcatcttgagtatgcataccctccacctgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agacttggtgttgattatccatttcctcctcatcttgagtatgcataccctccacctgat 583
Query: 481 ggaaatatactgaccaacattgtgaatgctcttattgccgttccccgcttttacactcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaaatatactgaccaacattgtgaatgctcttattgccgttccccgcttttacactcag 643
Query: 541 gttctgcacttgatgaacaaaatgaacattccggctccattccgtatggcactgcccaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttctgcacttgatgaacaaaatgaacattccggctccattccgtatggcactgcccaca 703
Query: 601 ccaccattaccgccagaggtgccagccccaccaccacctgtgcctcctcctcatccttct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccaccattaccgccagaggtgccagccccaccaccacctgtgcctcctcctcatccttct 763
Query: 661 gtaactgcaaaacctcagtctgc 683
|||||||||||||||||||||||
Sbjct: 764 gtaactgcaaaacctcagtctgc 786
>gnl|LJGI|TC58293 similar to UniRef100_A7QHK3 Cluster: Chromosome chr5 scaffold_98,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_98, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 786
Score = 920 bits (464), Expect = 0.0
Identities = 464/464 (100%)
Strand = Plus / Plus
Query: 1 atggctgagagccaatttggatttcaaagcacaggcacaacaatggcagagtcaaatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atggctgagagccaatttggatttcaaagcacaggcacaacaatggcagagtcaaatcct 135
Query: 61 tccgctacccttataatcaagcaccttcctgaagccattccacacgacacactctctcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tccgctacccttataatcaagcaccttcctgaagccattccacacgacacactctctcga 195
Query: 121 ctcttgtcccattacaacgcttcctccgttcgcccgtgctctgctgcaaggttgaggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctcttgtcccattacaacgcttcctccgttcgcccgtgctctgctgcaaggttgaggaat 255
Query: 181 tgtgcttttgtggattttaaaaatgatatgctggcgtctcaagcacagcgtcaactaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtgcttttgtggattttaaaaatgatatgctggcgtctcaagcacagcgtcaactaaat 315
Query: 241 gggttgagatttcttggcaaagtcttgtcagcagagagagctaacccaattgacaatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggttgagatttcttggcaaagtcttgtcagcagagagagctaacccaattgacaatggt 375
Query: 301 gaaaaaagtagtggtgctcagcaaggaaaggactctaaaacatcagtggtaaatgtaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaaaaaagtagtggtgctcagcaaggaaaggactctaaaacatcagtggtaaatgtaacc 435
Query: 361 aaatctgttgatgaagatacaaaatcagcaggcctccctactcctcagccaattgctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatctgttgatgaagatacaaaatcagcaggcctccctactcctcagccaattgctgat 495
Query: 421 agacttggtgttgattatccatttcctcctcatcttgagtatgc 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agacttggtgttgattatccatttcctcctcatcttgagtatgc 539
>gnl|LJGI|TC69577 homologue to UniRef100_A7QHK2 Cluster: Chromosome chr5 scaffold_98,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_98, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 762
Score = 293 bits (148), Expect = 1e-78
Identities = 151/152 (99%)
Strand = Plus / Plus
Query: 1190 tgcaggaaggaaggatgaggggtcaagcatttttaacattcccctccactgagttggctc 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggaaggaaggatgaggggtcaagcatttttaacattcccctccactgagttggctc 60
Query: 1250 atcatgctctgaatctagtgaatgggcatgtatttaaaggaaagccaatgatcatccagt 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 atcatgctctgaatctagtgaatgggcatgtatttaaaggaaagccaatgatcattcagt 120
Query: 1310 ttggtcggaatcctgctgctgccaaataaact 1341
||||||||||||||||||||||||||||||||
Sbjct: 121 ttggtcggaatcctgctgctgccaaataaact 152