Miyakogusa Predicted Gene

Lj1g3v3904630.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3904630.1 Non Chatacterized Hit- tr|Q9FFY0|Q9FFY0_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,29.79,9e-17,seg,NULL,CUFF.31473.1
         (2313 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC597666 weakly similar to UniRef100_Q9FFY0 Cluster: Ge...  1120   0.0  
gnl|LJGI|TC76595 similar to UniRef100_Q8HMJ4 Cluster: NADH-ubiqu...   168   1e-40

>gnl|LJGI|DC597666 weakly similar to UniRef100_Q9FFY0 Cluster: Genomic DNA  chromosome
           5  P1 clone:MAC12; n=2; Arabidopsis thaliana|Rep:
           Genomic DNA, partial (9%)
          Length = 565

 Score = 1120 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Plus

                                                                       
Query: 347 tgcagtttcttcccagtgacttaaagccacatcaagttgtcagagaattactttcagggg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgcagtttcttcccagtgacttaaagccacatcaagttgtcagagaattactttcagggg 60

                                                                       
Query: 407 ataactttcactttggaaacccttttgtaaaatggggttctttactttgttcaggttctc 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataactttcactttggaaacccttttgtaaaatggggttctttactttgttcaggttctc 120

                                                                       
Query: 467 ttcatccagatatgattgttaaccaggagcagcatctaaaatctgataaaagagcatact 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcatccagatatgattgttaaccaggagcagcatctaaaatctgataaaagagcatact 180

                                                                       
Query: 527 actcacagatacataattatcacaaggatatggtaggatttctagttaagttgaagagga 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actcacagatacataattatcacaaggatatggtaggatttctagttaagttgaagagga 240

                                                                       
Query: 587 ggtgggaaagctgcaaagatccagaaaaggaaattctgcagatgattcggaggtcaaaga 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgggaaagctgcaaagatccagaaaaggaaattctgcagatgattcggaggtcaaaga 300

                                                                       
Query: 647 atgatgtagataaaagaacacagccaaacttgaatgaatttatcgttgatgatcatgatg 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgatgtagataaaagaacacagccaaacttgaatgaatttatcgttgatgatcatgatg 360

                                                                       
Query: 707 ggaatgttacagcaacatccgagtcgtgttcctgggatgcagaggagaaagcacacagtg 766
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaatgttacagcaacatccgagtcgtgttcctgggatgcagaggagaaagcacacagtg 420

                                                                       
Query: 767 ataaccaaatttcctcaatcggacagcgagatgaacatcagaaaagggtgcttgacaaag 826
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaccaaatttcctcaatcggacagcgagatgaacatcagaaaagggtgcttgacaaag 480

                                                                       
Query: 827 gcttcagtaaaggtaaacccagaaatctgatggtttcttcagatatgcccaatgtgggag 886
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcttcagtaaaggtaaacccagaaatctgatggtttcttcagatatgcccaatgtgggag 540

                                    
Query: 887 aaaaacccaagaaaggtgacaaaat 911
           |||||||||||||||||||||||||
Sbjct: 541 aaaaacccaagaaaggtgacaaaat 565


>gnl|LJGI|TC76595 similar to UniRef100_Q8HMJ4 Cluster: NADH-ubiquinone oxidoreductase
           chain 2; n=1; Carapus bermudensis|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Carapus bermudensis, partial
           (6%)
          Length = 591

 Score =  168 bits (85), Expect = 1e-40
 Identities = 209/249 (83%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 64  aaaagaaagaatttggaactagtgcaaagtgatttaaccatgaaatctcatgtttttgtt 123
           ||||||||||||| || || ||  |||| |||||||| | ||| ||||||  | | ||||
Sbjct: 245 aaaagaaagaattcgggacaaggtcaaaatgatttaaacctgagatctcacatctctgtt 304

                                                                       
Query: 124 gagtgggatggtaatcaccaaaagg-tggttgccaagcgggaacagattggcatcagttg 182
           ||||||||| |||||||  |||||| | || ||||||||||||||||||||||||||| |
Sbjct: 305 gagtgggatagtaatcagtaaaagggttgtggccaagcgggaacagattggcatcagtcg 364

                                                                       
Query: 183 gagacaaatgaaaccatttgccagttttgctcatgatggacacaacatcttggcagatgt 242
           |||||||||||||||||||| || ||||| |  | |||  || ||  |||||||||||||
Sbjct: 365 gagacaaatgaaaccatttgtcaattttgtttctaatgatcataaagtcttggcagatgt 424

                                                                       
Query: 243 ccttgcaatacctgaagaaatttttggcttggatagtttaagtgaagtgctttcgtatga 302
             || |||| ||| |||||||||||  |||||||| |||||||||||||||||| |||||
Sbjct: 425 gtttacaatgcctcaagaaattttttccttggataatttaagtgaagtgctttcatatga 484

                    
Query: 303 ggtttggaa 311
           |||||||||
Sbjct: 485 ggtttggaa 493