Miyakogusa Predicted Gene

Lj1g3v3903020.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3903020.1 Non Chatacterized Hit- tr|C0P5C2|C0P5C2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,46.43,2e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,gene.g35607.t1.1
         (618 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO029711 similar to UniRef100_A7Q161 Cluster: Chromosom...   208   3e-53
gnl|LJGI|TC61457 similar to UniRef100_A7P7V8 Cluster: Chromosome...   161   6e-39

>gnl|LJGI|GO029711 similar to UniRef100_A7Q161 Cluster: Chromosome chr10 scaffold_43,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr10 scaffold_43, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (33%)
          Length = 948

 Score =  208 bits (105), Expect = 3e-53
 Identities = 111/113 (98%)
 Strand = Plus / Minus

                                                                       
Query: 504 aggtggtgctgcttattcattgccacctatgctgccttccgtgtcttctgttgctgctcc 563
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 653 aggtggtgctgcttattcattgccacctatgctgccttccgtatcttctgttgctgctcc 594

                                                                
Query: 564 aatggtctatgatcagagggcggaaagtgcaactggcataggcatgctttctt 616
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 593 aatggtctatgatcagagggcggaaagtgcaactggcatgggcatgctttctt 541



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 55/59 (93%), Gaps = 4/59 (6%)
 Strand = Plus / Minus

                                                                      
Query: 450 cgatgaagacgatactgaagtttcaattcagcttctagttccatccaaagtgataggtg 508
           |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 948 cgatgaagacgatactgaag-ttcaa-tcagc-tctag-tccatccaaagtgataggtg 894


>gnl|LJGI|TC61457 similar to UniRef100_A7P7V8 Cluster: Chromosome chr3 scaffold_8,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr3 scaffold_8, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (34%)
          Length = 1162

 Score =  161 bits (81), Expect = 6e-39
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                        
Query: 21   gttttcggataagcatattgtgaggctcccggagactcctgatgagatacctggaggagg 80
            |||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1009 gttttcagataagcaaattgtgaggctccaggagactcctgatgagatacctgaaggagg 1068

                                                                        
Query: 81   aatgcttcacatagttagcttgctgatgcaggacaagctgacagaagctggaaagccagg 140
            ||  | ||||| |||||||||||||||||| |||||||||  ||| ||||||||||||||
Sbjct: 1069 aacacctcacacagttagcttgctgatgcatgacaagctggtagatgctggaaagccagg 1128

                         
Query: 141  tggcagagttgag 153
            || ||||||||||
Sbjct: 1129 tgacagagttgag 1141