Miyakogusa Predicted Gene
- Lj1g3v3754960.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3754960.1 tr|B9NHA2|B9NHA2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584780 PE=4
SV=1,37.5,0.000000000000005,UBX-RELATED,NULL; UBX,UBX; seg,NULL;
Ubiquitin-like,NULL; no description,NULL,CUFF.31152.1
(789 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58534 similar to UniRef100_A7PLV0 Cluster: Chromosome... 1564 0.0
gnl|LJGI|BW594317 weakly similar to UniRef100_A7PLV0 Cluster: Ch... 829 0.0
gnl|LJGI|AV765134 similar to UniRef100_A7PLV0 Cluster: Chromosom... 248 4e-65
gnl|LJGI|TC81067 similar to UniRef100_A7PLV0 Cluster: Chromosome... 232 3e-60
>gnl|LJGI|TC58534 similar to UniRef100_A7PLV0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (77%)
Length = 1133
Score = 1564 bits (789), Expect = 0.0
Identities = 789/789 (100%)
Strand = Plus / Plus
Query: 1 atggtcgtaggtggttccttcccactagcttccaagaggagaagactcaccaacacatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atggtcgtaggtggttccttcccactagcttccaagaggagaagactcaccaacacatat 107
Query: 61 tcctcagccatggattctgaggcggctaaggccaagcttgcagctatgacagaaagatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tcctcagccatggattctgaggcggctaaggccaagcttgcagctatgacagaaagatat 167
Query: 121 ggacgagagttccatgtttttgaaacatcaactttttctccatcttcaaatgctgcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ggacgagagttccatgtttttgaaacatcaactttttctccatcttcaaatgctgcatca 227
Query: 181 tctaacgcatcccaattaaatgtggaagaagaggagacggatgacttagagttttcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tctaacgcatcccaattaaatgtggaagaagaggagacggatgacttagagttttcccca 287
Query: 241 gaagattatatccggatttcatccattaaaaagccagaacccatcttgaagactcgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaagattatatccggatttcatccattaaaaagccagaacccatcttgaagactcgaaaa 347
Query: 301 atgcgagaagcagaagcggcggctcgcaagtcgaaaatgaccagagctgtaattagagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atgcgagaagcagaagcggcggctcgcaagtcgaaaatgaccagagctgtaattagagtt 407
Query: 361 cgcttccctgataatcacacattggaggctaccttcgacccatcggaaacaatccagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cgcttccctgataatcacacattggaggctaccttcgacccatcggaaacaatccagact 467
Query: 421 ttaattgatctcctcattaaagtgattgcacagccagagcagccattttatatatatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttaattgatctcctcattaaagtgattgcacagccagagcagccattttatatatatact 527
Query: 481 gttccacctaagaagctgatcactaacatgtctcaggatttttatgctgctggcttttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttccacctaagaagctgatcactaacatgtctcaggatttttatgctgctggcttttgt 587
Query: 541 cccggtgcccttgttaacttttcctatgatgtttcaaaaggtggttccgctgttgacctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cccggtgcccttgttaacttttcctatgatgtttcaaaaggtggttccgctgttgacctt 647
Query: 601 aacagtccttacctacgcgaagagatcttatctttgaagggttcagatgctgctaatgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aacagtccttacctacgcgaagagatcttatctttgaagggttcagatgctgctaatgat 707
Query: 661 caaggccagcaatctgagcttgtacaatctgaaccagagcctgtggagccaacaaagcca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 caaggccagcaatctgagcttgtacaatctgaaccagagcctgtggagccaacaaagcca 767
Query: 721 cccactcctgtgcaggaacaaaaacctgctcagaaaaagcttgttaaaccaaaatggcta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cccactcctgtgcaggaacaaaaacctgctcagaaaaagcttgttaaaccaaaatggcta 827
Query: 781 aagatgtga 789
|||||||||
Sbjct: 828 aagatgtga 836
>gnl|LJGI|BW594317 weakly similar to UniRef100_A7PLV0 Cluster: Chromosome chr14
scaffold_21, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (43%)
Length = 539
Score = 829 bits (418), Expect = 0.0
Identities = 418/418 (100%)
Strand = Plus / Plus
Query: 1 atggtcgtaggtggttccttcccactagcttccaagaggagaagactcaccaacacatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atggtcgtaggtggttccttcccactagcttccaagaggagaagactcaccaacacatat 181
Query: 61 tcctcagccatggattctgaggcggctaaggccaagcttgcagctatgacagaaagatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcctcagccatggattctgaggcggctaaggccaagcttgcagctatgacagaaagatat 241
Query: 121 ggacgagagttccatgtttttgaaacatcaactttttctccatcttcaaatgctgcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggacgagagttccatgtttttgaaacatcaactttttctccatcttcaaatgctgcatca 301
Query: 181 tctaacgcatcccaattaaatgtggaagaagaggagacggatgacttagagttttcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctaacgcatcccaattaaatgtggaagaagaggagacggatgacttagagttttcccca 361
Query: 241 gaagattatatccggatttcatccattaaaaagccagaacccatcttgaagactcgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagattatatccggatttcatccattaaaaagccagaacccatcttgaagactcgaaaa 421
Query: 301 atgcgagaagcagaagcggcggctcgcaagtcgaaaatgaccagagctgtaattagagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgcgagaagcagaagcggcggctcgcaagtcgaaaatgaccagagctgtaattagagtt 481
Query: 361 cgcttccctgataatcacacattggaggctaccttcgacccatcggaaacaatccaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgcttccctgataatcacacattggaggctaccttcgacccatcggaaacaatccaga 539
>gnl|LJGI|AV765134 similar to UniRef100_A7PLV0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 397
Score = 248 bits (125), Expect = 4e-65
Identities = 146/153 (95%)
Strand = Plus / Minus
Query: 637 aagggttcagatgctgctaatgatcaaggccagcaatctgagcttgtacaatctgaacca 696
|||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||
Sbjct: 397 aagggttcagatgctgctaatgatcaaggccagccatctgagtttgtccaatttgaacca 338
Query: 697 gagcctgtggagccaacaaagccacccactcctgtgcaggaacaaaaacctgctcagaaa 756
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 337 gagcctgtggagccaacaaagccaccccctcctgtgcaggaacaaaaacctgctcagaaa 278
Query: 757 aagcttgttaaaccaaaatggctaaagatgtga 789
||||||||| |||||||||||||||| ||||||
Sbjct: 277 aagcttgtttaaccaaaatggctaaaaatgtga 245
>gnl|LJGI|TC81067 similar to UniRef100_A7PLV0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (61%)
Length = 971
Score = 232 bits (117), Expect = 3e-60
Identities = 252/297 (84%)
Strand = Plus / Plus
Query: 287 tgaagactcgaaaaatgcgagaagcagaagcggcggctcgcaagtcgaaaatgaccagag 346
|||||||||||||||| ||||||||||||| ||| ||||| ||| | |||||||| ||
Sbjct: 260 tgaagactcgaaaaatccgagaagcagaagaggcagctcgtcggtccagaatgaccaaag 319
Query: 347 ctgtaattagagttcgcttccctgataatcacacattggaggctaccttcgacccatcgg 406
| || || ||||||||||||||||||||||| |||||||||||||| || || |||| |
Sbjct: 320 cagtgatcagagttcgcttccctgataatcagacattggaggctacttttcactcatctg 379
Query: 407 aaacaatccagactttaattgatctcctcattaaagtgattgcacagccagagcagccat 466
|||||||||||| ||||||| |||| || | |||| | |||||||| |||||||||||||
Sbjct: 380 aaacaatccagagtttaattaatcttcttaataaattaattgcacaaccagagcagccat 439
Query: 467 tttatatatatactgttccacctaagaagctgatcactaacatgtctcaggatttttatg 526
|||||||||||||| ||| ||||||||| |||||| |||||||||| ||||| |||
Sbjct: 440 tttatatatatactactccgcctaagaaggtgatcaaagacatgtctcaagatttctata 499
Query: 527 ctgctggcttttgtcccggtgcccttgttaacttttcctatgatgtttcaaaaggtg 583
|||||| |||||||| ||||| |||| ||||||| ||||||||| |||||||||
Sbjct: 500 gtgctggattttgtcctggtgctattgtgtacttttcatatgatgttccaaaaggtg 556
Score = 56.0 bits (28), Expect = 3e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 742 aaacctgctcagaaaaagcttgttaaaccaaaatggctaaagatgtga 789
||||||||| |||||||| ||||||||||||| ||||| || ||||||
Sbjct: 721 aaacctgctgagaaaaagtttgttaaaccaaagtggctgaaaatgtga 768