Miyakogusa Predicted Gene

Lj1g3v3717010.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3717010.1 Non Chatacterized Hit- tr|G7K6I4|G7K6I4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,76.25,0,DUF946,Vacuolar protein sorting-associated protein
62; PRE-MRNA PROCESSING-RELATED,NULL; PRE-MRNA
PR,NODE_73616_length_2078_cov_21.984119.path1.1
         (1797 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP033343 similar to UniRef100_A7Q1K9 Cluster: Chromosom...   125   1e-27
gnl|LJGI|TC63875 similar to UniRef100_A7Q1K9 Cluster: Chromosome...    64   3e-09
gnl|LJGI|BW630144 similar to UniRef100_A7Q1K9 Cluster: Chromosom...    60   5e-08

>gnl|LJGI|BP033343 similar to UniRef100_A7Q1K9 Cluster: Chromosome chr7 scaffold_44,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr7 scaffold_44, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (9%)
          Length = 481

 Score =  125 bits (63), Expect = 1e-27
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1723 gtggagctgtatggtgaggaaggtcctacagggccaaaagagaagaataattggattgga 1782
            ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 405  gtggagctgtatggtgaggaaggtcctactgggcccaaagagaaaaataattggattgga 346

                           
Query: 1783 gatgaaagatggtga 1797
            |||||||||||||||
Sbjct: 345  gatgaaagatggtga 331


>gnl|LJGI|TC63875 similar to UniRef100_A7Q1K9 Cluster: Chromosome chr7 scaffold_44,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr7 scaffold_44, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (20%)
          Length = 957

 Score = 63.9 bits (32), Expect = 3e-09
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 1594 tggttgcagtatatgagagagtggggtcctaaaattgtttatggttca 1641
            |||||||||||||||||||||||||||||||  ||||| |||| ||||
Sbjct: 147  tggttgcagtatatgagagagtggggtcctaccattgtatatgattca 194


>gnl|LJGI|BW630144 similar to UniRef100_A7Q1K9 Cluster: Chromosome chr7 scaffold_44,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr7 scaffold_44, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (28%)
          Length = 504

 Score = 60.0 bits (30), Expect = 5e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                              
Query: 1190 tgtgggttttttgccccttcaatggaccttccac 1223
            ||||||||||||||||||||||||||||| ||||
Sbjct: 209  tgtgggttttttgccccttcaatggacctgccac 242



 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 1039 attggaggaacaaatgatggtgagttttggatagatttgcc 1079
            ||||||||||||||||||||||  |||||||| ||||||||
Sbjct: 61   attggaggaacaaatgatggtgccttttggatcgatttgcc 101