Miyakogusa Predicted Gene
- Lj1g3v3620610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3620610.1 tr|Q2HWC8|Q2HWC8_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MtrDRAFT_AC147482g3v2 PE=4
SV=1,28.49,2e-18,RNI-like,NULL; F-box domain,F-box domain,
cyclin-like; A Receptor for Ubiquitination Targets,F-box
d,gene.g35085.t1.1
(1017 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome... 82 8e-15
gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome... 82 8e-15
gnl|LJGI|FS331731 similar to UniRef100_A7QK65 Cluster: Chromosom... 60 3e-08
gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosom... 58 1e-07
gnl|LJGI|DC598736 weakly similar to UniRef100_A7QK65 Cluster: Ch... 58 1e-07
gnl|LJGI|TC68402 weakly similar to UniRef100_Q8LF09 Cluster: F-b... 58 1e-07
gnl|LJGI|TC63810 weakly similar to UniRef100_A7QK65 Cluster: Chr... 56 4e-07
gnl|LJGI|BW625254 weakly similar to UniRef100_A7QK65 Cluster: Ch... 52 7e-06
gnl|LJGI|TC73575 similar to UniRef100_A7QK65 Cluster: Chromosome... 52 7e-06
gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyc... 52 7e-06
>gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 1384
Score = 81.8 bits (41), Expect = 8e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 41 gtcacattctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaaga 100
|||||||||||| ||||| |||| || |||||||||||||||||||||| |||||||
Sbjct: 108 gtcacattctcttctttctctcaactgaacaagctgttgccacaagtgttctctcaaaga 167
Query: 101 gatggaggcctctctgg 117
|||||||||| ||||||
Sbjct: 168 gatggaggcccctctgg 184
>gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1489
Score = 81.8 bits (41), Expect = 8e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 41 gtcacattctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaaga 100
||||||||||||||||||| | |||| | ||||||| ||||||||||||||| |||||||
Sbjct: 201 gtcacattctctcttttctccaaacacaagaagctgctgccacaagtgttctttcaaaga 260
Query: 101 gatggaggc 109
| |||||||
Sbjct: 261 ggtggaggc 269
>gnl|LJGI|FS331731 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 593
Score = 60.0 bits (30), Expect = 3e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 49 ctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaagagatggagg 108
||||||||||| ||||| || |||||||||||||||| ||||| || ||| |||||| |
Sbjct: 112 ctctcttttctcccaaccaagcaagctgttgccacaagcgttctctcgaagcgatggatg 171
Query: 109 cctctctggc 118
||||| ||||
Sbjct: 172 cctctatggc 181
>gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 812
Score = 58.0 bits (29), Expect = 1e-07
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 22 ttgccagatgaaatacttggtcacattctctcttttctgccaacagaggaagctgttgcc 81
|||||||||||| | || ||||||||||||| ||||| || || || |||||||| ||
Sbjct: 21 ttgccagatgaagttctctgtcacattctctcatttcttcccactgaagaagctgtcacc 80
Query: 82 acaagtgttctatcaaagagatggaggcctctctggc 118
|| | | |||| |||||||||||||| || |||||||
Sbjct: 81 accattcttctctcaaagagatggagaccactctggc 117
>gnl|LJGI|DC598736 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 553
Score = 58.0 bits (29), Expect = 1e-07
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 43 cacattctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaagaga 102
||||||||||||||||| ||||| |||| ||| |||||||||| ||||| || ||| |
Sbjct: 123 cacattctctcttttctcccaaccgaggtagcaattgccacaagcgttctctcgaagcgg 182
Query: 103 tggaggcctctctggctttccctcaccactctc 135
|||| |||||| |||| ||| || ||||||||
Sbjct: 183 tggaagcctctatggcgttcagtccccactctc 215
>gnl|LJGI|TC68402 weakly similar to UniRef100_Q8LF09 Cluster: F-box/FBD/LRR-repeat
protein At4g00160; n=2; Arabidopsis thaliana|Rep:
F-box/FBD/LRR-repeat protein At4g00160 - Arabidopsis
thaliana (Mouse-ear cress), partial (13%)
Length = 773
Score = 58.0 bits (29), Expect = 1e-07
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 22 ttgccagatgaaatacttggtcacattctctcttttctgccaacagaggaagctgttgcc 81
|||||||||||| | || |||| |||||||| ||||| || || || || |||||||||
Sbjct: 65 ttgccagatgaagttctgtgtcaaattctctcatttcttcccacggaagatgctgttgcc 124
Query: 82 acaagtgttctatcaaagagatggaggcctctctggctttc 122
||||||||||| | ||||| ||||| | |||||||||||
Sbjct: 125 acaagtgttctctgcaagaggtggagttccctctggctttc 165
>gnl|LJGI|TC63810 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (18%)
Length = 750
Score = 56.0 bits (28), Expect = 4e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 22 ttgccagatgaaatacttggtcacattctctcttttctgccaac 65
|||||||||||| ||||| |||||||||||||||||| |||||
Sbjct: 272 ttgccagatgaagtactttatcacattctctcttttcttccaac 315
>gnl|LJGI|BW625254 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (18%)
Length = 480
Score = 52.0 bits (26), Expect = 7e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 22 ttgccagatgaaatacttggtcacattctctcttttct 59
|||||||||||| ||||| ||||||||||||||||||
Sbjct: 249 ttgccagatgaagtacttcatcacattctctcttttct 286
>gnl|LJGI|TC73575 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 1447
Score = 52.0 bits (26), Expect = 7e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 41 gtcacattctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaaga 100
|||| ||||| || ||||| || || || |||||||||||||| |||||||| ||| |||
Sbjct: 95 gtcaaattctttcatttcttcccactgaagaagctgttgccaccagtgttctctcacaga 154
Query: 101 gatggaggcctctctggctttc 122
| ||||| | |||||||||||
Sbjct: 155 ggtggagttcactctggctttc 176
>gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyclin-like F-box; FBD;
Zinc finger, FYVE/PHD-type; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; FBD; Zinc finger,
FYVE/PHD-type - Medicago truncatula (Barrel medic),
partial (19%)
Length = 1534
Score = 52.0 bits (26), Expect = 7e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 45 cattctctcttttctgccaacagaggaagctgttgccacaagtgttctatcaaagagatg 104
||||||||| ||||| || || || || ||||||||||| | |||||| || ||||||||
Sbjct: 311 cattctctcatttcttccgactgaagacgctgttgccaccattgttctctccaagagatg 370
Query: 105 gaggcctctctggc 118
||| || |||||||
Sbjct: 371 gagaccactctggc 384