Miyakogusa Predicted Gene
- Lj1g3v3592790.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3592790.1 Non Chatacterized Hit- tr|B9T5H6|B9T5H6_RICCO 60S
ribosomal protein L32, putative OS=Ricinus
communi,91.73,0,Ribosomal_L32e,Ribosomal protein L32e;
Q45NI6_MEDSA_Q45NI6;,Ribosomal protein L32e; 60S RIBOSOMAL
PR,CUFF.30929.1
(402 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71673 homologue to UniRef100_Q45NI6 Cluster: Ribosoma... 797 0.0
gnl|LJGI|AW428840 homologue to UniRef100_Q45NI6 Cluster: Ribosom... 603 e-172
gnl|LJGI|BP044319 similar to UniRef100_Q45NI6 Cluster: Ribosomal... 337 3e-92
gnl|LJGI|TC65684 homologue to UniRef100_Q45NI6 Cluster: Ribosoma... 258 2e-68
gnl|LJGI|AV766315 similar to UniRef100_Q45NI6 Cluster: Ribosomal... 178 2e-44
gnl|LJGI|TC61061 similar to UniRef100_A7R527 Cluster: Chromosome... 80 1e-14
>gnl|LJGI|TC71673 homologue to UniRef100_Q45NI6 Cluster: Ribosomal protein L32; n=1;
Medicago sativa|Rep: Ribosomal protein L32 - Medicago
sativa (Alfalfa), complete
Length = 671
Score = 797 bits (402), Expect = 0.0
Identities = 402/402 (100%)
Strand = Plus / Plus
Query: 1 atggccgttcccttgctgaccaagaaaattgtgaagaagcgtgtgaagaggttcattagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atggccgttcccttgctgaccaagaaaattgtgaagaagcgtgtgaagaggttcattagg 129
Query: 61 ccccaaagtgacaggaaaatttgtgttaagcccagctggcgcaggccgaagggtattgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccccaaagtgacaggaaaatttgtgttaagcccagctggcgcaggccgaagggtattgat 189
Query: 121 tcccgtgttaggagaaagttcaaaggatgtgttttgatgcccaacattggttatggctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcccgtgttaggagaaagttcaaaggatgtgttttgatgcccaacattggttatggctca 249
Query: 181 gacaagaagacccgccactatctgcctaatggattcaagaagtttgtcgtgcacaatgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gacaagaagacccgccactatctgcctaatggattcaagaagtttgtcgtgcacaatgtc 309
Query: 241 aaggatcttgagcttctgatgatgcacaacaggacatactgtgctgagatagcgcacaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaggatcttgagcttctgatgatgcacaacaggacatactgtgctgagatagcgcacaat 369
Query: 301 gtatcgaccaggaaaaggaaggatattgtagagcgtgcagcacagttggatgttgttgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtatcgaccaggaaaaggaaggatattgtagagcgtgcagcacagttggatgttgttgtc 429
Query: 361 accaacaaacttgccaggttgcgcagccaagaggatgagtga 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 accaacaaacttgccaggttgcgcagccaagaggatgagtga 471
>gnl|LJGI|AW428840 homologue to UniRef100_Q45NI6 Cluster: Ribosomal protein L32; n=1;
Medicago sativa|Rep: Ribosomal protein L32 - Medicago
sativa (Alfalfa), partial (82%)
Length = 380
Score = 603 bits (304), Expect = e-172
Identities = 328/337 (97%), Gaps = 8/337 (2%)
Strand = Plus / Plus
Query: 1 atggccgttcccttgctgaccaagaaaattgtgaagaagcgtgtgaagaggttcattagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atggccgttcccttgctgaccaagaaaattgtgaagaagcgtgtgaagaggttcattagg 103
Query: 61 ccccaaagtgacaggaaaatttgtgttaagcccagctggcgcaggccgaagggtattgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ccccaaagtgacaggaaaatttgtgttaagcccagctggcgcaggccgaagggtattgat 163
Query: 121 tcccgtgttaggagaaagttcaaaggatgtgttttgatgcccaacattggttatggctca 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 164 tcccgtgttaggagaaagttcaaaggatgtgttctgatgcccaacattggttatggctca 223
Query: 181 gacaagaagacccgccactatctgcctaatggattcaagaagtttgtcgtgcacaatgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gacaagaagacccgccactatctgcctaatggattcaagaagtttgtcgtgcacaatgtc 283
Query: 241 aaggatcttgagcttctgatgatgcacaa--------caggacatactgtgctgagatag 292
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 284 aaggatcttgagcttctgatgatgcacaacagaatttcaggacatactgtgctgagatag 343
Query: 293 cgcacaatgtatcgaccaggaaaaggaaggatattgt 329
|||||||||||||||||||||||||||||||||||||
Sbjct: 344 cgcacaatgtatcgaccaggaaaaggaaggatattgt 380
>gnl|LJGI|BP044319 similar to UniRef100_Q45NI6 Cluster: Ribosomal protein L32; n=1;
Medicago sativa|Rep: Ribosomal protein L32 - Medicago
sativa (Alfalfa), partial (47%)
Length = 450
Score = 337 bits (170), Expect = 3e-92
Identities = 185/190 (97%)
Strand = Plus / Minus
Query: 213 attcaagaagtttgtcgtgcacaatgtcaaggatcttgagcttctgatgatgcacaacag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 450 attcaagaagtttgtcgtgcacaatgtcaaggatcttgagcttctgatgatgccccacgg 391
Query: 273 gacatactgtgctgagatagcgcacaatgtatcgaccaggaaaaggaaggatattgtaga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gacatactgtgctgagatagcgcacaatgtatcgaccaggaaaaggaaggatattgtaga 331
Query: 333 gcgtgcagcacagttggatgttgttgtcaccaacaaacttgccaggttgcgcagccaaga 392
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 330 gcgtgcagcaccgttggatgttgttgtcacccacaaacttgccaggttgcgcagccaaga 271
Query: 393 ggatgagtga 402
||||||||||
Sbjct: 270 ggatgagtga 261
>gnl|LJGI|TC65684 homologue to UniRef100_Q45NI6 Cluster: Ribosomal protein L32; n=1;
Medicago sativa|Rep: Ribosomal protein L32 - Medicago
sativa (Alfalfa), complete
Length = 620
Score = 258 bits (130), Expect = 2e-68
Identities = 264/306 (86%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 94 agctggcgcaggccgaagggtattgattcccgtgttaggagaaagttcaaaggatgtgt- 152
|||||||||||||| ||||||||||| || || || |||||||||||||| || |||
Sbjct: 126 agctggcgcaggcccaagggtattgactctcgggtcaggagaaagttcaaggg-tgtcac 184
Query: 153 tttgatgcccaacattggttatggctcagacaagaagacccgccactatctgcctaatgg 212
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 185 tttgatgcccaacattggttatggctcagacaagaagacccgccattatctgcccaatgg 244
Query: 213 attcaagaagtttgtcgtgcacaatgtcaaggatcttgagcttctgatgatgcacaacag 272
|||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct: 245 tttcaagaaatttgttgtgcacaatgtgaaggaccttgagcttctcatgatgcataacag 304
Query: 273 gacatactgtgctgagatagcgcacaatgtatcgaccaggaaaaggaaggatattgtaga 332
|||||||||||| ||||| || |||||||| || |||||||| |||||||| ||||| ||
Sbjct: 305 gacatactgtgccgagattgctcacaatgtttctaccaggaagaggaaggacattgttga 364
Query: 333 gcgtgcagcacagttggatgttgttgtcaccaacaaacttgccaggttgcgcagccaaga 392
| | || || ||| | |||||||| || || |||||| |||||| | |||||||| ||
Sbjct: 365 gagagctgctcagcttgatgttgtggtgacaaacaaaactgccagacttcgcagccagga 424
Query: 393 ggatga 398
||||||
Sbjct: 425 ggatga 430
>gnl|LJGI|AV766315 similar to UniRef100_Q45NI6 Cluster: Ribosomal protein L32; n=1;
Medicago sativa|Rep: Ribosomal protein L32 - Medicago
sativa (Alfalfa), partial (41%)
Length = 271
Score = 178 bits (90), Expect = 2e-44
Identities = 144/162 (88%)
Strand = Plus / Minus
Query: 229 gtgcacaatgtcaaggatcttgagcttctgatgatgcacaacaggacatactgtgctgag 288
|||||||||| |||||||||||||||||| |||||||||| ||| |||| ||| |||
Sbjct: 269 gtgcacaatgccaaggatcttgagcttctaatgatgcacaccagaacatcttgttttgaa 210
Query: 289 atagcgcacaatgtatcgaccaggaaaaggaaggatattgtagagcgtgcagcacagttg 348
||||||| || ||||||| ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct: 209 atagcgcccattgtatcgtccaggaaaaggaaggattttgtagagcgtccagcccagttg 150
Query: 349 gatgttgttgtcaccaacaaacttgccaggttgcgcagccaa 390
||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 149 aatgttgttgtcaccaccaaacttgccaggttgggcagccaa 108
>gnl|LJGI|TC61061 similar to UniRef100_A7R527 Cluster: Chromosome undetermined
scaffold_840, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_840,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (68%)
Length = 870
Score = 79.8 bits (40), Expect = 1e-14
Identities = 164/204 (80%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 124 cgtgttaggagaaagttcaaaggatgtgttttgatgcccaacattggttatggc-tcaga 182
|||||||||||||||||||| ||||| ||||||||| || ||| |||||| | |||||
Sbjct: 461 cgtgttaggagaaagttcaagggatgcactttgatgccaaatatttgttatgtcttcaga 520
Query: 183 caagaagacccgccactatctgcctaatggattcaagaagtttgtcgtgcacaatgtcaa 242
||| ||||| || || ||||| |||||| | || ||||| ||||| || | ||| ||
Sbjct: 521 caaaaagactcgtcattatctccctaattgttttaagaaatttgttgtttctattgtgaa 580
Query: 243 ggatcttgagcttctgatgatgcacaacaggacatactgtgctgagatagcgcacaatgt 302
|||| | ||||| || ||||||| ||||| || |||||||||||||| || ||||||||
Sbjct: 581 ggatttggagctgctagtgatgcataacagaacttactgtgctgagattgcacacaatgt 640
Query: 303 atcgaccaggaaaaggaaggatat 326
|| || ||||| || ||||||||
Sbjct: 641 atacactaggaagagaaaggatat 664