Miyakogusa Predicted Gene
- Lj1g3v3580650.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3580650.1 CUFF.30962.1
(660 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62427 similar to UniRef100_Q3HRZ6 Cluster: Ribosomal ... 1300 0.0
gnl|LJGI|TC57173 homologue to UniRef100_Q3HRZ6 Cluster: Ribosoma... 646 0.0
gnl|LJGI|TC67539 homologue to UniRef100_Q3HRZ6 Cluster: Ribosoma... 642 0.0
gnl|LJGI|TC63852 homologue to UniRef100_P49199 Cluster: 40S ribo... 170 7e-42
gnl|LJGI|BI420620 similar to UniRef100_A1YKE4 Cluster: Ribosomal... 80 2e-14
>gnl|LJGI|TC62427 similar to UniRef100_Q3HRZ6 Cluster: Ribosomal protein S8; n=1;
Solanum tuberosum|Rep: Ribosomal protein S8 - Solanum
tuberosum (Potato), partial (96%)
Length = 864
Score = 1300 bits (656), Expect = 0.0
Identities = 659/660 (99%)
Strand = Plus / Plus
Query: 1 atgggtatttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgggtatttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagc 123
Query: 61 tggaggaagaagagaaagtatgagctcggtcgccaggcagcaaacaccaagttgtcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tggaggaagaagagaaagtatgagctcggtcgccaggcagcaaacaccaagttgtcaagc 183
Query: 121 aacaagactattaggaggattcgtgttagaggtggcaacgtgaagtggagggcactgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aacaagactattaggaggattcgtgttagaggtggcaacgtgaagtggagggcactgaga 243
Query: 181 ttggatactggaaacttttcatggggtagtgaaacagtaactcgcaagacgcgtctatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttggatactggaaacttttcatggggtagtgaaacagtaactcgcaagacgcgtctatta 303
Query: 241 gatgtggtttacaatgcctcaaacaatgagcttgtgcgaacccaaaccctggtcaaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gatgtggtttacaatgcctcaaacaatgagcttgtgcgaacccaaaccctggtcaaaagt 363
Query: 301 gctattgttcaggttgatgctgctccgttcaaacagtggtaccttcagcactatggggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctattgttcaggttgatgctgctccgttcaaacagtggtaccttcagcactatggggtt 423
Query: 361 gatattggcagaaagaagaaaacaacatccaagaaggactctacagaggagggtgaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gatattggcagaaagaagaaaacaacatccaagaaggactctacagaggagggtgaagct 483
Query: 421 gctgctgaagacggaaagaaaagtaaccatgtgcagaggaaacttgagaatcgccagaaa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 484 gctgctgaagacggaaagaaaagtaaccatgtgcagaggaagcttgagaatcgccagaaa 543
Query: 481 gatcgtactcttgatgcccacatcgaagagcaatttagtggtggccgattgctggcatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gatcgtactcttgatgcccacatcgaagagcaatttagtggtggccgattgctggcatgt 603
Query: 541 atttcttctcgcccgggtcaatgtggcagggctgatgggtacatactagaaggtaaggaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atttcttctcgcccgggtcaatgtggcagggctgatgggtacatactagaaggtaaggaa 663
Query: 601 ctggaattttacatgaagaaacttcagaagaagaagggaaagggtgctgcagcctaattt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctggaattttacatgaagaaacttcagaagaagaagggaaagggtgctgcagcctaattt 723
>gnl|LJGI|TC57173 homologue to UniRef100_Q3HRZ6 Cluster: Ribosomal protein S8; n=1;
Solanum tuberosum|Rep: Ribosomal protein S8 - Solanum
tuberosum (Potato), partial (96%)
Length = 921
Score = 646 bits (326), Expect = 0.0
Identities = 569/650 (87%)
Strand = Plus / Plus
Query: 1 atgggtatttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagc 60
||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
Sbjct: 83 atggggatttctagggattccatgcacaagaggcgtgccactggtggaaagcagaagacc 142
Query: 61 tggaggaagaagagaaagtatgagctcggtcgccaggcagcaaacaccaagttgtcaagc 120
|||||||||||| ||||||||||||| ||||||||| |||| ||||| ||| | || |||
Sbjct: 143 tggaggaagaagcgaaagtatgagcttggtcgccagccagctaacactaagctatctagc 202
Query: 121 aacaagactattaggaggattcgtgttagaggtggcaacgtgaagtggagggcactgaga 180
||||||||| | ||||||||||||||||| ||||| || || ||||||||||| ||||||
Sbjct: 203 aacaagactgtcaggaggattcgtgttaggggtggtaatgtcaagtggagggctctgaga 262
Query: 181 ttggatactggaaacttttcatggggtagtgaaacagtaactcgcaagacgcgtctatta 240
||||||||||||||||| |||||||| || || || || ||||| || || ||||| ||
Sbjct: 263 ttggatactggaaacttctcatggggaagcgagactgttactcggaaaacccgtcttcta 322
Query: 241 gatgtggtttacaatgcctcaaacaatgagcttgtgcgaacccaaaccctggtcaaaagt 300
||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| ||
Sbjct: 323 gatgtggtttacaatgcctcaaacaatgagcttgtccgaactcagacccttgtcaaaggt 382
Query: 301 gctattgttcaggttgatgctgctccgttcaaacagtggtaccttcagcactatggggtt 360
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 383 gctattgttcaggttgatgctgctccattcaagcagtggtacctccagcactatggtgtt 442
Query: 361 gatattggcagaaagaagaaaacaacatccaagaaggactctacagaggagggtgaagct 420
|| |||||||| || ||||||||| | |||||||||||||||| ||||| ||||| |||
Sbjct: 443 gaaattggcaggaaaaagaaaacagctgccaagaaggactctactgaggaaggtgaggct 502
Query: 421 gctgctgaagacggaaagaaaagtaaccatgtgcagaggaaacttgagaatcgccagaaa 480
| ||| |||||| || || || |||||||||||| | || || |||||||||||||||
Sbjct: 503 gttgcagaagacaccaaaaagagcaaccatgtgcagcgaaagctggagaatcgccagaaa 562
Query: 481 gatcgtactcttgatgcccacatcgaagagcaatttagtggtggccgattgctggcatgt 540
|||||||| |||||| | ||||| |||||||| ||| | ||||| ||||||||||| ||
Sbjct: 563 gatcgtacccttgattctcacattgaagagcagtttggcggtggacgattgctggcctgc 622
Query: 541 atttcttctcgcccgggtcaatgtggcagggctgatgggtacatactagaaggtaaggaa 600
|| |||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 623 atatcttctcgacctggtcaatgtggcagggctgatggctacattctagagggtaaagag 682
Query: 601 ctggaattttacatgaagaaacttcagaagaagaagggaaagggtgctgc 650
|| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 cttgaattttacatgaagaaactccagaagaagaagggaaagggtgctgc 732
>gnl|LJGI|TC67539 homologue to UniRef100_Q3HRZ6 Cluster: Ribosomal protein S8; n=1;
Solanum tuberosum|Rep: Ribosomal protein S8 - Solanum
tuberosum (Potato), partial (95%)
Length = 1106
Score = 642 bits (324), Expect = 0.0
Identities = 564/644 (87%)
Strand = Plus / Plus
Query: 7 atttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagctggagg 66
|||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||
Sbjct: 206 atttctagggattccatgcacaagaggcgtgccactggtggaaagcagaagacctggagg 265
Query: 67 aagaagagaaagtatgagctcggtcgccaggcagcaaacaccaagttgtcaagcaacaag 126
|||||| ||||||||||||| ||||||||| |||| ||||| ||| | || |||||||||
Sbjct: 266 aagaagcgaaagtatgagcttggtcgccagccagctaacactaagctatctagcaacaag 325
Query: 127 actattaggaggattcgtgttagaggtggcaacgtgaagtggagggcactgagattggat 186
||| | ||||||||||||||||| ||||| || || ||||||||||| ||||||||||||
Sbjct: 326 actgtcaggaggattcgtgttaggggtggtaatgtcaagtggagggctctgagattggat 385
Query: 187 actggaaacttttcatggggtagtgaaacagtaactcgcaagacgcgtctattagatgtg 246
||||||||||| |||||||| || || || || ||||| || || ||||| ||||||||
Sbjct: 386 actggaaacttctcatggggaagcgagactgttactcggaaaacccgtcttctagatgtg 445
Query: 247 gtttacaatgcctcaaacaatgagcttgtgcgaacccaaaccctggtcaaaagtgctatt 306
||||||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||
Sbjct: 446 gtttacaatgcctcaaacaatgagcttgtccgaactcagacccttgtcaaaggtgctatt 505
Query: 307 gttcaggttgatgctgctccgttcaaacagtggtaccttcagcactatggggttgatatt 366
|||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 506 gttcaggttgatgctgctccattcaagcagtggtacctccagcactatggtgttgaaatt 565
Query: 367 ggcagaaagaagaaaacaacatccaagaaggactctacagaggagggtgaagctgctgct 426
||||| || ||||||||| | |||||||||||||||| ||||| ||||| |||| |||
Sbjct: 566 ggcaggaaaaagaaaacagctgccaagaaggactctactgaggaaggtgaggctgttgca 625
Query: 427 gaagacggaaagaaaagtaaccatgtgcagaggaaacttgagaatcgccagaaagatcgt 486
|||||| || || || |||||||||||| | || || |||||||||||||||||||||
Sbjct: 626 gaagacaccaaaaagagcaaccatgtgcagcgaaagctggagaatcgccagaaagatcgt 685
Query: 487 actcttgatgcccacatcgaagagcaatttagtggtggccgattgctggcatgtatttct 546
|| |||||| | ||||| |||||||| ||| | ||||| ||||||||||| || || |||
Sbjct: 686 acccttgattctcacattgaagagcagtttggcggtggacgattgctggcctgcatatct 745
Query: 547 tctcgcccgggtcaatgtggcagggctgatgggtacatactagaaggtaaggaactggaa 606
||||| || ||||||||||||||||||||||| ||||| ||||| ||||| || || |||
Sbjct: 746 tctcgacctggtcaatgtggcagggctgatggctacattctagagggtaaagagcttgaa 805
Query: 607 ttttacatgaagaaacttcagaagaagaagggaaagggtgctgc 650
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 806 ttttacatgaagaaactccagaagaagaagggaaagggtgctgc 849
>gnl|LJGI|TC63852 homologue to UniRef100_P49199 Cluster: 40S ribosomal protein S8;
n=2; Oryza sativa Japonica Group|Rep: 40S ribosomal
protein S8 - Oryza sativa subsp. japonica (Rice),
partial (95%)
Length = 1142
Score = 170 bits (86), Expect = 7e-42
Identities = 293/362 (80%)
Strand = Plus / Plus
Query: 1 atgggtatttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagc 60
|||||||| ||| | ||||||||||||||||| || ||||||||||| || ||||||
Sbjct: 161 atgggtatctctcgtgattccatgcacaagaggcgcgccactggtggtaaaaagaaggct 220
Query: 61 tggaggaagaagagaaagtatgagctcggtcgccaggcagcaaacaccaagttgtcaagc 120
||||||||||||||||||||||||||||| | || |||| ||||||||| | ||||||
Sbjct: 221 tggaggaagaagagaaagtatgagctcgggaggcaaccagctaacaccaagctttcaagc 280
Query: 121 aacaagactattaggaggattcgtgttagaggtggcaacgtgaagtggagggcactgaga 180
||||| ||| ||||||||||| | ||| ||||||| || ||||||||| | || ||||
Sbjct: 281 aacaaaactgttaggaggattagggttcgaggtgggaatgtgaagtggcgtgcgttgagg 340
Query: 181 ttggatactggaaacttttcatggggtagtgaaacagtaactcgcaagacgcgtctatta 240
| |||||||||||||| || ||||| |||||||| || || ||||| || | | |
Sbjct: 341 cttgatactggaaacttctcctgggggagtgaaactgtgacccgcaaaactagaattctt 400
Query: 241 gatgtggtttacaatgcctcaaacaatgagcttgtgcgaacccaaaccctggtcaaaagt 300
|||||||| || ||||| || ||||||||||| || || || || || ||||||| ||
Sbjct: 401 gatgtggtgtataatgcatccaacaatgagctggttcgtactcagacattggtcaagggt 460
Query: 301 gctattgttcaggttgatgctgctccgttcaaacagtggtaccttcagcactatggggtt 360
|| ||| ||||||||||||| ||||| ||||| |||||||| || || || ||||| |||
Sbjct: 461 gccattattcaggttgatgcagctcctttcaagcagtggtatctccaacattatggtgtt 520
Query: 361 ga 362
||
Sbjct: 521 ga 522
Score = 77.8 bits (39), Expect = 8e-14
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 556 ggtcaatgtggcagggctgatgggtacatactagaaggtaaggaactggaattttacatg 615
||||||||||| | ||||||| || ||| ||||||| || || || ||||| ||||||
Sbjct: 719 ggtcaatgtggtcgttctgatggatatatattagaaggcaaagagctagaattctacatg 778
Query: 616 aagaaacttcagaagaagaagggaaagggtgctgc 650
||||| ||||||||||||||||| |||||||||||
Sbjct: 779 aagaagcttcagaagaagaagggcaagggtgctgc 813
>gnl|LJGI|BI420620 similar to UniRef100_A1YKE4 Cluster: Ribosomal protein S8; n=1;
Brachypodium sylvaticum|Rep: Ribosomal protein S8 -
Brachypodium sylvaticum (False brome), partial (19%)
Length = 133
Score = 79.8 bits (40), Expect = 2e-14
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 1 atgggtatttctagggattccatgcacaagagacgtgccactggtggcaagaagaagagc 60
||||| |||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 6 atggggatttctagggattccatgcacaagaggcgtgccactggttttttttataagacc 65
Query: 61 tggaggaagaagagaaagtatgagctcggtcg 92
|||||||||||| ||||||||||||| |||||
Sbjct: 66 tggaggaagaagcgaaagtatgagcttggtcg 97