Miyakogusa Predicted Gene
- Lj1g3v3542660.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3542660.2 tr|D7LUF3|D7LUF3_ARALL Pentatricopeptide
repeat-containing protein OS=Arabidopsis lyrata subsp.
lyra,42.61,2e-18,PPR,Pentatricopeptide repeat; PPR_2,Pentatricopeptide
repeat; PPR: pentatricopeptide repeat domain,P,CUFF.30911.2
(954 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58241 similar to UniRef100_A7QAE1 Cluster: Chromosome... 1001 0.0
gnl|LJGI|TC60893 similar to UniRef100_A7QAE1 Cluster: Chromosome... 664 0.0
gnl|LJGI|TC74365 60 3e-08
gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosom... 52 6e-06
>gnl|LJGI|TC58241 similar to UniRef100_A7QAE1 Cluster: Chromosome undetermined
scaffold_70, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_70, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (36%)
Length = 810
Score = 1001 bits (505), Expect = 0.0
Identities = 505/505 (100%)
Strand = Plus / Plus
Query: 1 atgaagaacagcaagatagcgtcgcagaaagcagtttcagtgatactgcggagagaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atgaagaacagcaagatagcgtcgcagaaagcagtttcagtgatactgcggagagaggcc 365
Query: 61 accaaggctatcattgacaagagaaggaagaagggtccaatcaattccaagaagcttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 accaaggctatcattgacaagagaaggaagaagggtccaatcaattccaagaagcttctg 425
Query: 121 cctagaacagtgcttgaagcgcttcatgagagggtcactgctttgcgttgggaatctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cctagaacagtgcttgaagcgcttcatgagagggtcactgctttgcgttgggaatctgca 485
Query: 181 ctcaaggtctttgaactactgcgtgaacagctctggtacagacctaactctggtgtgtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcaaggtctttgaactactgcgtgaacagctctggtacagacctaactctggtgtgtac 545
Query: 241 atcaagttaatagtcatgcttggaaaatgtaagcaacctgagaaagctcttgaactcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atcaagttaatagtcatgcttggaaaatgtaagcaacctgagaaagctcttgaactcttt 605
Query: 301 caagctatggttgatgaaggttgtgttgtggattgtgaatcatacactgcattgttatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caagctatggttgatgaaggttgtgttgtggattgtgaatcatacactgcattgttatct 665
Query: 361 gcctacagcagaagtggtctcttggagagagctttctctcttcttgaggaaatgaagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcctacagcagaagtggtctcttggagagagctttctctcttcttgaggaaatgaagagt 725
Query: 421 acacctggttgtcagccagatgtccagacttactcaatcctcataaaatcttgtttggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acacctggttgtcagccagatgtccagacttactcaatcctcataaaatcttgtttggag 785
Query: 481 gttttcgcatttgataaagttcagg 505
|||||||||||||||||||||||||
Sbjct: 786 gttttcgcatttgataaagttcagg 810
>gnl|LJGI|TC60893 similar to UniRef100_A7QAE1 Cluster: Chromosome undetermined
scaffold_70, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_70, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (42%)
Length = 717
Score = 664 bits (335), Expect = 0.0
Identities = 335/335 (100%)
Strand = Plus / Plus
Query: 620 tggaaatgctagctgaccgagattgccaaccggatgtatggaccatgaattcaacactca 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaaatgctagctgaccgagattgccaaccggatgtatggaccatgaattcaacactca 60
Query: 680 gggcctttggcaaccttgggcaaatagacaccatggagaggtgttatgacaagtttcaga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggcctttggcaaccttgggcaaatagacaccatggagaggtgttatgacaagtttcaga 120
Query: 740 ctgctggaattcaacctaatgttcagactttcaatattctcttggattcctatggcaagg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgctggaattcaacctaatgttcagactttcaatattctcttggattcctatggcaagg 180
Query: 800 gtcatgattacaagaaaatgagcgctgtgatggaatacatgcaaaagtaccattattctt 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcatgattacaagaaaatgagcgctgtgatggaatacatgcaaaagtaccattattctt 240
Query: 860 ggacaattgtgacctataatattgtgattgatgcttttgggaaggctggggatctccaac 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggacaattgtgacctataatattgtgattgatgcttttgggaaggctggggatctccaac 300
Query: 920 agatggagtatttgtttagactaatgcggtcagag 954
|||||||||||||||||||||||||||||||||||
Sbjct: 301 agatggagtatttgtttagactaatgcggtcagag 335
>gnl|LJGI|TC74365
Length = 488
Score = 60.0 bits (30), Expect = 3e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 148 gagagggtcactgctttgcgttgggaatctgcactcaa 185
||||||||||||||| ||||||||||||||||| ||||
Sbjct: 196 gagagggtcactgctctgcgttgggaatctgcattcaa 233
>gnl|LJGI|BW619567 similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_9, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 486
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 148 gagagggtcactgctttgcgttgggaatctgcactcaa 185
||||||||||||||| |||||| | |||||||||||||
Sbjct: 163 gagagggtcactgctctgcgtttgaaatctgcactcaa 200