Miyakogusa Predicted Gene
- Lj1g3v3529530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3529530.1 Non Chatacterized Hit- tr|I1HP97|I1HP97_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,35.09,0.001,SUBFAMILY NOT NAMED,NULL; SINGLE STRANDED DNA BINDING
PROTEIN,Sequence-specific single-strand
DNA-bi,NODE_35589_length_721_cov_87.274620.path2.1
(600 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79497 similar to UniRef100_Q6H975 Cluster: STY-L prot... 1110 0.0
gnl|LJGI|FS343258 88 7e-17
gnl|LJGI|BP038600 88 7e-17
gnl|LJGI|AV410689 UniRef100_O48847 Cluster: Expressed protein; n... 84 1e-15
gnl|LJGI|TC82774 similar to UniRef100_Q9FUY2 Cluster: Transcript... 72 4e-12
gnl|LJGI|TC74643 similar to UniRef100_A7PHE6 Cluster: Chromosome... 72 4e-12
>gnl|LJGI|TC79497 similar to UniRef100_Q6H975 Cluster: STY-L protein; n=1;
Antirrhinum majus|Rep: STY-L protein - Antirrhinum majus
(Garden snapdragon), partial (23%)
Length = 724
Score = 1110 bits (560), Expect = 0.0
Identities = 563/564 (99%)
Strand = Plus / Plus
Query: 1 atgaagcccactttggctcaggctcagagtaattgggaagctgataaaatgcttgacgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgaagcccactttggctcaggctcagagtaattgggaagctgataaaatgcttgacgtt 220
Query: 61 tatattcatgactattttgtgaaaagaaaattacataatgctgctaaagcatttatgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tatattcatgactattttgtgaaaagaaaattacataatgctgctaaagcatttatgaca 280
Query: 121 gaaggaaaagtttccacagacccagtagcaattgatgcacctggaggatttctttatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaggaaaagtttccacagacccagtagcaattgatgcacctggaggatttctttatgag 340
Query: 181 tggtggtctgtcttttgggacatattcatctcgaggacaaatgagaaacattcggaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tggtggtctgtcttttgggacatattcatctcgaggacaaatgagaaacattcggaggct 400
Query: 241 gccgcatcttacattgagacccagcaaataaaggccagagaacaacttcaaatgcagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gccgcatcttacattgagacccagcaaataaaggccagagaacaacttcaaatgcagcaa 460
Query: 301 ttgcaactaatgcagcagcgcaatgcacagttacagcgaagagatcctaatcatcccgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgcaactaatgcagcagcgcaatgcacagttacagcgaagagatcctaatcatcccgca 520
Query: 361 cttggtggatccttgaatgccatgaactctgaaggaatgttgggccagccgccagcaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cttggtggatccttgaatgccatgaactctgaaggaatgttgggccagccgccagcaagt 580
Query: 421 gtgttagccatgaaaatgtatgaagaacaaatgaaacatccccaatcaatggattcagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtgttagccatgaaaatgtatgaagaacaaatgaaacatccccaatcaatggattcagac 640
Query: 481 ccatctccaactcttagtgatgcgaataggattgcccttctcaaatcagctacaagtcat 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 641 ccatctccaactcttagtgatgcgaataggatggcccttctcaaatcagctacaagtcat 700
Query: 541 caaggccagttggttcatggtaat 564
||||||||||||||||||||||||
Sbjct: 701 caaggccagttggttcatggtaat 724
>gnl|LJGI|FS343258
Length = 571
Score = 87.7 bits (44), Expect = 7e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 147 agcaattgatgcacctggaggatttctttatgagtggtggtctgtcttttgggaca 202
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 agcaattgattcacttggaggattactttatgagtggtggtctgtcttttgggaca 361
>gnl|LJGI|BP038600
Length = 558
Score = 87.7 bits (44), Expect = 7e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 147 agcaattgatgcacctggaggatttctttatgagtggtggtctgtcttttgggaca 202
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 agcaattgattcacttggaggattactttatgagtggtggtctgtcttttgggaca 350
>gnl|LJGI|AV410689 UniRef100_O48847 Cluster: Expressed protein; n=1; Arabidopsis
thaliana|Rep: Expressed protein - Arabidopsis thaliana
(Mouse-ear cress), partial (6%)
Length = 429
Score = 83.8 bits (42), Expect = 1e-15
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 25 cagagtaattgggaagctgataaaatgcttgacgtttatattcatgactattttgtgaaa 84
||||||||||||||||| ||||| |||||||| ||||| ||| |||| ||||| |||||
Sbjct: 296 cagagtaattgggaagcagataagatgcttgatgtttacatttatgattatttggtgaag 355
Query: 85 agaaaattacataatgctgctaaagcatttatgacagaaggaaaagtttccacagaccca 144
| ||| || || ||| |||| || |||| ||||||||||| || ||||| | || |||
Sbjct: 356 aaaaagttgcacaatactgccaagtcattcatgacagaagggaaggtttctcccgatcca 415
Query: 145 gtagcaattgatgc 158
||||||||||||||
Sbjct: 416 gtagcaattgatgc 429
>gnl|LJGI|TC82774 similar to UniRef100_Q9FUY2 Cluster: Transcriptional corepressor
LEUNIG; n=1; Arabidopsis thaliana|Rep: Transcriptional
corepressor LEUNIG - Arabidopsis thaliana (Mouse-ear
cress), partial (17%)
Length = 618
Score = 71.9 bits (36), Expect = 4e-12
Identities = 114/140 (81%)
Strand = Plus / Plus
Query: 121 gaaggaaaagtttccacagacccagtagcaattgatgcacctggaggatttctttatgag 180
||||||||||| ||| | ||||| || || |||||||| || ||||| || || | ||||
Sbjct: 40 gaaggaaaagtatcctctgaccctgttgctattgatgccccgggaggtttcctgtttgag 99
Query: 181 tggtggtctgtcttttgggacatattcatctcgaggacaaatgagaaacattcggaggct 240
|||||||| || || ||||||||||| || | ||||| |||||||| || |||||||
Sbjct: 100 tggtggtcggttttctgggacatatttattgccaggactaatgagaagcactcggaggtc 159
Query: 241 gccgcatcttacattgagac 260
||||||||||| || |||||
Sbjct: 160 gccgcatcttatatcgagac 179
>gnl|LJGI|TC74643 similar to UniRef100_A7PHE6 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 1106
Score = 71.9 bits (36), Expect = 4e-12
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 148 gcaattgatgcacctggaggatttctttatgagt-ggtggtctgtcttttgggaca 202
||||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 292 gcaattgattcacttggaggattactttatgagtgggtggtctgtcttttgggaca 347