Miyakogusa Predicted Gene
- Lj1g3v3444150.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3444150.1 tr|A9RJ26|A9RJ26_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=Pb PE=4
SV=1,57.32,7e-19,Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain,CUFF.30751.1
(342 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69983 similar to UniRef100_A7PNR0 Cluster: Chromosome... 662 0.0
gnl|LJGI|GO040840 similar to UniRef100_A7PNR0 Cluster: Chromosom... 587 e-167
gnl|LJGI|TC82571 similar to UniRef100_A7PNR0 Cluster: Chromosome... 240 5e-63
>gnl|LJGI|TC69983 similar to UniRef100_A7PNR0 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 521
Score = 662 bits (334), Expect = 0.0
Identities = 340/342 (99%)
Strand = Plus / Plus
Query: 1 atggctacctcatcaatcatattacggtcgtcattgtcattttactctacaaaccagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 atggctacctcatcaatcatattacggtcgtcattgtcattttactctacaaaccagcaa 73
Query: 61 gtatatttgaatagatcagcaactcacaagaacaagaacagggtttccttcttccgtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtatatttgaatagatcagcaactcacaagaacaagaacagggtttccttcttccgtgtc 133
Query: 121 caagcagcagcaaagccccctgccggtgtagaatttccaaaagtacagccgcaatttaaa 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 134 caagcagcagcaaagccccctgccggtgcagaatttccaaaagtacagccgcaatttaaa 193
Query: 181 gctccatttcttgggttcacaaagacagcagaagtatggaactctagagcttgcatgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gctccatttcttgggttcacaaagacagcagaagtatggaactctagagcttgcatgatt 253
Query: 241 ggactcattggaactttcattgtagagcttataataaacaagggaatacttcaggtgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggactcattggaactttcattgtagagcttataataaacaagggaatacttcaggtgatt 313
Query: 301 ggagttgagattgggaaaggccttaatcttcctctttgagca 342
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 ggagttgagattgggaaaggccttaatctacctctttgagca 355
>gnl|LJGI|GO040840 similar to UniRef100_A7PNR0 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (48%)
Length = 347
Score = 587 bits (296), Expect = e-167
Identities = 299/300 (99%)
Strand = Plus / Minus
Query: 1 atggctacctcatcaatcatattacggtcgtcattgtcattttactctacaaaccagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atggctacctcatcaatcatattacggtcgtcattgtcattttactctacaaaccagcaa 241
Query: 61 gtatatttgaatagatcagcaactcacaagaacaagaacagggtttccttcttccgtgtc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 240 gtatatttgaatagatcagcaactcacaagaacaagaacggggtttccttcttccgtgtc 181
Query: 121 caagcagcagcaaagccccctgccggtgtagaatttccaaaagtacagccgcaatttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 caagcagcagcaaagccccctgccggtgtagaatttccaaaagtacagccgcaatttaaa 121
Query: 181 gctccatttcttgggttcacaaagacagcagaagtatggaactctagagcttgcatgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gctccatttcttgggttcacaaagacagcagaagtatggaactctagagcttgcatgatt 61
Query: 241 ggactcattggaactttcattgtagagcttataataaacaagggaatacttcaggtgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ggactcattggaactttcattgtagagcttataataaacaagggaatacttcaggtgatt 1
>gnl|LJGI|TC82571 similar to UniRef100_A7PNR0 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 667
Score = 240 bits (121), Expect = 5e-63
Identities = 166/180 (92%), Gaps = 7/180 (3%)
Strand = Plus / Plus
Query: 64 tatttgaatagatcagcaactcacaagaacaagaacagggtttccttcttccgtgtccaa 123
||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct: 276 tatttgaatagatcagcaactcacaagaacatga------tttccttcttatgtgtccaa 329
Query: 124 gcagcagcaaagccccctgccggtgtagaatttccaaaagtacagccgcaatttaaagct 183
|||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||
Sbjct: 330 gcagcagcaaagcccc-tgctggtgtagagtttccaaaagtacagccgaaatttaaagct 388
Query: 184 ccatttcttgggttcacaaagacagcagaagtatggaactctagagcttgcatgattgga 243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 389 ccatttcttgggttcacaaagacaccagaagtatggaactctagagcttgcatgattgga 448