Miyakogusa Predicted Gene

Lj1g3v3385800.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3385800.1 tr|G7J5Y2|G7J5Y2_MEDTR Glutamate receptor
OS=Medicago truncatula GN=MTR_3g115910 PE=3
SV=1,78.17,0,ANF_receptor,Extracellular ligand-binding receptor;
Lig_chan,Ionotropic glutamate receptor; SBP_bac_,CUFF.30621.1
         (2790 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP056069 similar to UniRef100_A4GU97 Cluster: Glutamate...   377   e-103
gnl|LJGI|DC594966 similar to UniRef100_A7PXG9 Cluster: Chromosom...    62   2e-08

>gnl|LJGI|BP056069 similar to UniRef100_A4GU97 Cluster: Glutamate receptor; n=1; Malus
            hupehensis|Rep: Glutamate receptor - Malus hupehensis,
            partial (1%)
          Length = 360

 Score =  377 bits (190), Expect = e-103
 Identities = 253/277 (91%)
 Strand = Plus / Minus

                                                                        
Query: 2514 ttttgtcatttgcgggatggcttgctttattgcccttatcatatattttttgcagattat 2573
            |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 360  ttttgtcatttgcgggatggcttgctttatggcccttatcatatattttttccagattat 301

                                                                        
Query: 2574 gtgtcagttatcacattctgctcattctgattctgctgtaattgctagtccaattcgaag 2633
            |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 300  gtgtcagttatcaccttctgctcattctgattctgctgtaattgctagtcccattcgaag 241

                                                                        
Query: 2634 atttctctcactcattgatgnnnnnnnngatacatcaaggagtgggacaagaaagaggag 2693
            ||||||||||||| ||||||        |||||||||||||||||||| |||||||||||
Sbjct: 240  atttctctcactccttgatgaaaaaaaagatacatcaaggagtgggaccagaaagaggag 181

                                                                        
Query: 2694 tggagaagaaagctcacttgaggatcaactgggaaggcaatcaaagaggatacaaacaga 2753
            ||||||||||||||||||||||||||||||||||||   ||| |||||||||| ||| ||
Sbjct: 180  tggagaagaaagctcacttgaggatcaactgggaagcncatccaagaggataccaaccga 121

                                                 
Query: 2754 aacaacaattgagttcaatcaaactattaagtaataa 2790
            ||| || ||||||||| ||| ||||||||||||||||
Sbjct: 120  aaccaccattgagttccatccaactattaagtaataa 84


>gnl|LJGI|DC594966 similar to UniRef100_A7PXG9 Cluster: Chromosome chr12 scaffold_36,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr12 scaffold_36, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (10%)
          Length = 271

 Score = 61.9 bits (31), Expect = 2e-08
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 2002 aattccagctacactgcaagtttaacatccatactcacggtgcagca 2048
            ||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 2    aattcaagctacacagcaagcttaacatccatactcacagtgcagca 48