Miyakogusa Predicted Gene
- Lj1g3v3384650.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3384650.1 Non Chatacterized Hit- tr|I1QB12|I1QB12_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,36.61,5e-16,bromo domain,Bromodomain; coiled-coil,NULL;
BROMODOMAIN_2,Bromodomain; BROMODOMAIN,Bromodomain; no d,CUFF.30593.1
(2007 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74247 similar to UniRef100_A7QPC5 Cluster: Chromosome... 1241 0.0
gnl|LJGI|AU251696 similar to UniRef100_A7QPC5 Cluster: Chromosom... 642 0.0
gnl|LJGI|FS354057 homologue to UniRef100_UPI0000500E3E Cluster: ... 472 e-132
>gnl|LJGI|TC74247 similar to UniRef100_A7QPC5 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 766
Score = 1241 bits (626), Expect = 0.0
Identities = 678/704 (96%)
Strand = Plus / Plus
Query: 1 atgggcgaggtatctgaagcagcgatgacgaagaggaagaagaagggtcgcccttctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 atgggcgaggtatctgaagcagcgatgacgaagaggaagaagaagggtcgcccttctctt 84
Query: 61 ttggatcttcaaaagcgatctctcaagaaacaacaaaagcaacaacaataccgtcctccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ttggatcttcaaaagcgatctctcaagaaacaacaaaagcaacaacaataccgtcctccg 144
Query: 121 aatcccaattcatccaattccaacgtccctccgccgcagcacgattacgacgacgacgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aatcccaattcatccaattccaacgtccctccgccgcagcacgattacgacgacgacgac 204
Query: 181 gagcgaaaagacaagaagcgcaaactcctcgtcggcttgaattcccatctnnnnnnnnnn 240
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gagcgaaaagacaagaagcgcaaactcctcgtcggcttgaattcccatctccaccaccac 264
Query: 241 nnnnnnnnnacattattccccaattccgccgatcccgatgccaatcacaaacgccgccgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccacccaacattattccccaattccgccgatcccgatgccaatcacaaacgccgccgc 324
Query: 301 ggatcagatgaaacgccggatggaaaggtttcgaaagcgactgaaggcaaacatggttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatcagatgaaacgccggatggaaaggtttcgaaagcgactgaaggcaaacatggttca 384
Query: 361 cagggggagaccggtcccactacacctttgccagacaaaaagctcttgctgtttatcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggggagaccggtcccactacacctttgccagacaaaaagctcttgctgtttatcctt 444
Query: 421 gacaggcttcnnnnnnnggacactcatggggtattctctgaccctgtggatccagaggag 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacaggcttcaaaaaaaggacactcatggggtattctctgaccctgtggatccagaggag 504
Query: 481 cttcctgattatcatgatgtcattaaacaccctatggattttggcactgtaaggaacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttcctgattatcatgatgtcattaaacaccctatggattttggcactgtaaggaacaaa 564
Query: 541 gtggatggaggactatatgccaacttagaacaatttgagaatgatgtgttcttgatatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtggatggaggactatatgccaacttagaacaatttgagaatgatgtgttcttgatatgc 624
Query: 601 tctaatgcgatgcagtacaattcagcggatactatttactatcgacaggcccgagctatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctaatgcgatgcagtacaattcagcggatactatttactatcgacaggcccgagctatg 684
Query: 661 caagagatcgcgaagaaggactttgagaatttgagacaagacag 704
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagagatcgcgaagaaggactttgagaatttgagacaagacag 728
>gnl|LJGI|AU251696 similar to UniRef100_A7QPC5 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 374
Score = 642 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Plus
Query: 1159 gtaggtttacatgtgaagcatagctacgcaagaagcctagcccactttgctgcagatctt 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gtaggtttacatgtgaagcatagctacgcaagaagcctagcccactttgctgcagatctt 110
Query: 1219 ggtcctgttgtttgggagattgctgcaaagaaaatccgcagtgttctgccagcaggacat 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ggtcctgttgtttgggagattgctgcaaagaaaatccgcagtgttctgccagcaggacat 170
Query: 1279 gaatttggtccgggatgggtaagtgaagaggatgtgtcacagagacaacacttcccggtt 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaatttggtccgggatgggtaagtgaagaggatgtgtcacagagacaacacttcccggtt 230
Query: 1339 tttggtgaggagagaaattcagaccctcctgtaccagaggattatagcagtagatttctt 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tttggtgaggagagaaattcagaccctcctgtaccagaggattatagcagtagatttctt 290
Query: 1399 tcttgttcttctggctcatcctctcttgcaaatacatcatcatgcttgccaagtggagac 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcttgttcttctggctcatcctctcttgcaaatacatcatcatgcttgccaagtggagac 350
Query: 1459 atggcaattaatagagaatctggt 1482
||||||||||||||||||||||||
Sbjct: 351 atggcaattaatagagaatctggt 374
>gnl|LJGI|FS354057 homologue to UniRef100_UPI0000500E3E Cluster: HNF1 homeobox B; n=1;
Rattus norvegicus|Rep: HNF1 homeobox B - Rattus
norvegicus, partial (4%)
Length = 593
Score = 472 bits (238), Expect = e-132
Identities = 241/242 (99%)
Strand = Plus / Minus
Query: 1766 tgaacaactttagtcaattagattccagcagtttattagctcgggaatctggttttgagt 1825
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 593 tgaacaactttagtcaattagattccagcagtttattagctcgggaatctggatttgagt 534
Query: 1826 cacaaagattgcctcaagggcttgctggaaagtcatcttggcagggatttgaagttccta 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cacaaagattgcctcaagggcttgctggaaagtcatcttggcagggatttgaagttccta 474
Query: 1886 ctaaacagaactcattttcacttgctaatgacttaaatgggaagattggagcaacaaatc 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaaacagaactcattttcacttgctaatgacttaaatgggaagattggagcaacaaatc 414
Query: 1946 catccagttccaatgtggaggctggttctctgctgcagccaaatcttgcattgcagctat 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catccagttccaatgtggaggctggttctctgctgcagccaaatcttgcattgcagctat 354
Query: 2006 ga 2007
||
Sbjct: 353 ga 352