Miyakogusa Predicted Gene
- Lj1g3v3382520.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3382520.2 CUFF.30582.2
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72909 similar to UniRef100_Q58NH9 Cluster: Genome pol... 648 0.0
gnl|LJGI|BW595898 similar to UniRef100_Q9TD50 Cluster: NADH-ubiq... 494 e-139
gnl|LJGI|DC599611 80 1e-14
>gnl|LJGI|TC72909 similar to UniRef100_Q58NH9 Cluster: Genome polyprotein; n=1;
Hepatitis C virus|Rep: Genome polyprotein - Hepatitis C
virus, partial (21%)
Length = 570
Score = 648 bits (327), Expect = 0.0
Identities = 330/331 (99%)
Strand = Plus / Plus
Query: 1 atgaaccaaccatggctgcccccttttcctgacaacggacgaggaagcgacgcagactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atgaaccaaccatggctgcccccttttcctgacaacggacgaggaagcgacgcagactct 176
Query: 61 tctcccttctcccgcgactatgtcaacggtgacaacgttaattccaacacaatccttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctcccttctcccgcgactatgtcaacggtgacaacgttaattccaacacaatccttctt 236
Query: 121 ctttcgcttcccctcccgtcagttagtgttcgggaactacatctattttgctgtgcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctttcgcttcccctcccgtcagttagtgttcgggaactacatctattttgctgtgcagtt 296
Query: 181 tcatctccgctgagcccagcaccccgccgctgtcaattttcgatggccaattgctccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcatctccgctgagcccagcaccccgccgctgtcaattttcgatggccaattgctccagg 356
Query: 241 agcaatatcagagtccaactccgatggatatcatggaaacgacggagacaaaggttgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agcaatatcagagtccaactccgatggatatcatggaaacgacggagacaaaggttgcag 416
Query: 301 aaacaacatttttacaagatgggagaaaggt 331
||||||||||||||||| |||||||||||||
Sbjct: 417 aaacaacatttttacaaaatgggagaaaggt 447
>gnl|LJGI|BW595898 similar to UniRef100_Q9TD50 Cluster: NADH-ubiquinone oxidoreductase
chain 2; n=1; Cynolebias alexandri|Rep: NADH-ubiquinone
oxidoreductase chain 2 - Cynolebias alexandri, partial
(6%)
Length = 488
Score = 494 bits (249), Expect = e-139
Identities = 315/336 (93%), Gaps = 7/336 (2%)
Strand = Plus / Plus
Query: 1 atgaaccaaccatggctgcccccttttcctgacaacggacgaggaagcgacgcagactct 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 145 atgaaccaaccatggctgcccccttttcctgacaacgggcgaggaagcgacgcagactct 204
Query: 61 tctcccttctcccgcgactatgtcaacggtgacaacgttaattccaacacaatccttctt 120
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct: 205 tctcccttctcccgcgactatgtcaacggtgacaa-gttaattccgacactatccttctt 263
Query: 121 ctttcgcttcccctcccgtcagttagtgttcgggaactacatctattttgctgtgcagtt 180
||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||
Sbjct: 264 ctttcgcttcccctcccgtgagttagtgttcgggaactatgtatatttcgctgtgcagtt 323
Query: 181 tcatctccgctgagcccagcaccccgccgctgtcaattttcgatggccaattgctccagg 240
|||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct: 324 tcatctccgctgagcccagcaccctgtccccttcaattttcgatggccaattgctccagg 383
Query: 241 agcaatatcagagtccaactccgatggatatcatggaaacgacggagacaaaggttgcag 300
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 384 agcaatatcagagtccaacttcgatggatatcatggaaac------gacaaaggttgcag 437
Query: 301 aaacaacatttttacaagatgggagaaaggtaaaat 336
||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaacaacatttttacaagatgggagaaaggtaaaat 473
>gnl|LJGI|DC599611
Length = 179
Score = 79.8 bits (40), Expect = 1e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 25 tttcctgacaacggacgaggaagcgacgcagactcttctcccttctcccgcgactatg 82
|||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 122 tttcctgacaacggacgaggaaancacncaaactcttctcccttctcccgcgactatg 179