Miyakogusa Predicted Gene

Lj1g3v3354000.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3354000.1 Non Chatacterized Hit- tr|K4AIS8|K4AIS8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si038790,24.39,2e-18,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; no
description,Tetratricopeptide-like,CUFF.30509.1
         (1408 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW623353 weakly similar to UniRef100_A7P806 Cluster: Ch...   837   0.0  

>gnl|LJGI|BW623353 weakly similar to UniRef100_A7P806 Cluster: Chromosome chr3
           scaffold_8, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (23%)
          Length = 456

 Score =  837 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtccaactcaattattcaattcttgcaccaatgtcatgtaactaaaaacctctcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31  atgtccaactcaattattcaattcttgcaccaatgtcatgtaactaaaaacctctcagcc 90

                                                                       
Query: 61  ataaagaaactccatggcaatctactcagaacaggcacactctttttcttgcatgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ataaagaaactccatggcaatctactcagaacaggcacactctttttcttgcatgattta 150

                                                                       
Query: 121 cacaccaatctcattgctgcatacgccacatgccttcctaagaaccaccttcaaacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cacaccaatctcattgctgcatacgccacatgccttcctaagaaccaccttcaaacactg 210

                                                                       
Query: 181 cacaatttcttcaaatgcatgaactccaccaacccattacacttcaatgtcatcatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cacaatttcttcaaatgcatgaactccaccaacccattacacttcaatgtcatcatatct 270

                                                                       
Query: 241 aatttttgtcgcaaaggtttccccttccttgctctcaccgccttctccttcatgcacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatttttgtcgcaaaggtttccccttccttgctctcaccgccttctccttcatgcacacc 330

                                                                       
Query: 301 aacaatgttcccttggatacatacgctttatgcagcaccttaactgcttcatccagagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacaatgttcccttggatacatacgctttatgcagcaccttaactgcttcatccagagtc 390

                                                                       
Query: 361 aatgatgttaactttgggaaacagatacatgcccacgtggggaaattgggctggtcttct 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 391 aatgatgttaactttgggaaacagatacatgcccacgtgggaaaattgggctggtcttct 450

                 
Query: 421 agtgtg 426
           ||||||
Sbjct: 451 agtgtg 456