Miyakogusa Predicted Gene
- Lj1g3v3330190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3330190.1 Non Chatacterized Hit- tr|I1JSC1|I1JSC1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16027
PE,86.62,0,SIGMA70_2,RNA polymerase sigma-70 factor; sigma70-ECF: RNA
polymerase sigma factor, sigma-70,RNA pol,CUFF.30455.1
(1698 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67503 homologue to UniRef100_A7PSL8 Cluster: Chromoso... 1215 0.0
gnl|LJGI|TC64044 similar to UniRef100_A7PSL7 Cluster: Chromosome... 1072 0.0
gnl|LJGI|FS333716 similar to UniRef100_A7PSL7 Cluster: Chromosom... 993 0.0
gnl|LJGI|AV775941 similar to UniRef100_A7PSL8 Cluster: Chromosom... 496 e-139
>gnl|LJGI|TC67503 homologue to UniRef100_A7PSL8 Cluster: Chromosome chr6 scaffold_28,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_28, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (86%)
Length = 801
Score = 1215 bits (613), Expect = 0.0
Identities = 613/613 (100%)
Strand = Plus / Plus
Query: 1086 tgtaagaggtgcagagaagtttgatgcttccaagggttttaagttttcgacctatgctca 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaagaggtgcagagaagtttgatgcttccaagggttttaagttttcgacctatgctca 60
Query: 1146 ttggtggattaaacaggcagttcggaaatcactctctgatcagtcaagaactattcgcct 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtggattaaacaggcagttcggaaatcactctctgatcagtcaagaactattcgcct 120
Query: 1206 gccatttcacatggtggaggcgacttacagagtgaaggaggcaagaaaacaattgtatag 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gccatttcacatggtggaggcgacttacagagtgaaggaggcaagaaaacaattgtatag 180
Query: 1266 tgaaaatggaagacaccctgatgatgaagaagttgccgaagcaactgggctgtcaatgaa 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaaatggaagacaccctgatgatgaagaagttgccgaagcaactgggctgtcaatgaa 240
Query: 1326 gaggcttagtgctgtacttttgaccccaaaagctcccagatctctggaacagaagattgg 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggcttagtgctgtacttttgaccccaaaagctcccagatctctggaacagaagattgg 300
Query: 1386 gatcaaccagaatcttaaaccttcggaagtaattgctgatcctgaggctgaaacagctga 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatcaaccagaatcttaaaccttcggaagtaattgctgatcctgaggctgaaacagctga 360
Query: 1446 agaacagctcattaagcaattcatgaagaaggacttggaaaaggtactggacagtctaaa 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaacagctcattaagcaattcatgaagaaggacttggaaaaggtactggacagtctaaa 420
Query: 1506 tccaagagagaagcaggtcattagatggagatttggtatggatgatggaaggatgaagac 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccaagagagaagcaggtcattagatggagatttggtatggatgatggaaggatgaagac 480
Query: 1566 cctgcaagagataggagaaatgttaggtgtgagtagggagagaattaggcaaattgagtc 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctgcaagagataggagaaatgttaggtgtgagtagggagagaattaggcaaattgagtc 540
Query: 1626 ttgtgcttttaggaaactaaagaacaagaagagaaacaagcatttgcagcagtatttggt 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgtgcttttaggaaactaaagaacaagaagagaaacaagcatttgcagcagtatttggt 600
Query: 1686 ttcacaatcctag 1698
|||||||||||||
Sbjct: 601 ttcacaatcctag 613
>gnl|LJGI|TC64044 similar to UniRef100_A7PSL7 Cluster: Chromosome chr6 scaffold_28,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_28, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 726
Score = 1072 bits (541), Expect = 0.0
Identities = 541/541 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtgtttattgccacacttcaagtgccatcctcatccctctcctcctacgcatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atgtcgtgtttattgccacacttcaagtgccatcctcatccctctcctcctacgcatcat 245
Query: 61 cataaccatcaccatctattcataacgaaaacaagaccaaatttgtgtttccagcctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cataaccatcaccatctattcataacgaaaacaagaccaaatttgtgtttccagcctcaa 305
Query: 121 tgtgttttgttagccacaacttcagtatcaaaatcatcagcggcactccttaatctgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgtgttttgttagccacaacttcagtatcaaaatcatcagcggcactccttaatctgcca 365
Query: 181 accgagttggaattagatgctccaaacacgccttggccctatccctccacgcaggcaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 accgagttggaattagatgctccaaacacgccttggccctatccctccacgcaggcaaac 425
Query: 241 tttaaagcaacgtcgtctgcagaatcactgatcagcagtgaagatgctgtaatagctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttaaagcaacgtcgtctgcagaatcactgatcagcagtgaagatgctgtaatagctgct 485
Query: 301 gctgcttctgaagctcttgctcttgctaaagcggctgcgaaggttgcaaaggatgcggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gctgcttctgaagctcttgctcttgctaaagcggctgcgaaggttgcaaaggatgcggct 545
Query: 361 ctactagtaaaaaagaggcccccagccgaagcagggtatagaccacaagttccttccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctactagtaaaaaagaggcccccagccgaagcagggtatagaccacaagttccttccaaa 605
Query: 421 tctgataatttacttctcaattggattcaacatatggaagcagaagatgttgtagcagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctgataatttacttctcaattggattcaacatatggaagcagaagatgttgtagcagga 665
Query: 481 ggatccatgggtgctggagcagaagtaatggaagctgttgacataagccccagtgaagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggatccatgggtgctggagcagaagtaatggaagctgttgacataagccccagtgaagag 725
Query: 541 g 541
|
Sbjct: 726 g 726
>gnl|LJGI|FS333716 similar to UniRef100_A7PSL7 Cluster: Chromosome chr6 scaffold_28,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_28, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 739
Score = 993 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtgtttattgccacacttcaagtgccatcctcatccctctcctcctacgcatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atgtcgtgtttattgccacacttcaagtgccatcctcatccctctcctcctacgcatcat 298
Query: 61 cataaccatcaccatctattcataacgaaaacaagaccaaatttgtgtttccagcctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cataaccatcaccatctattcataacgaaaacaagaccaaatttgtgtttccagcctcaa 358
Query: 121 tgtgttttgttagccacaacttcagtatcaaaatcatcagcggcactccttaatctgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtgttttgttagccacaacttcagtatcaaaatcatcagcggcactccttaatctgcca 418
Query: 181 accgagttggaattagatgctccaaacacgccttggccctatccctccacgcaggcaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 accgagttggaattagatgctccaaacacgccttggccctatccctccacgcaggcaaac 478
Query: 241 tttaaagcaacgtcgtctgcagaatcactgatcagcagtgaagatgctgtaatagctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttaaagcaacgtcgtctgcagaatcactgatcagcagtgaagatgctgtaatagctgct 538
Query: 301 gctgcttctgaagctcttgctcttgctaaagcggctgcgaaggttgcaaaggatgcggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gctgcttctgaagctcttgctcttgctaaagcggctgcgaaggttgcaaaggatgcggct 598
Query: 361 ctactagtaaaaaagaggcccccagccgaagcagggtatagaccacaagttccttccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctactagtaaaaaagaggcccccagccgaagcagggtatagaccacaagttccttccaaa 658
Query: 421 tctgataatttacttctcaattggattcaacatatggaagcagaagatgttgtagcagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctgataatttacttctcaattggattcaacatatggaagcagaagatgttgtagcagga 718
Query: 481 ggatccatgggtgctggagca 501
|||||||||||||||||||||
Sbjct: 719 ggatccatgggtgctggagca 739
>gnl|LJGI|AV775941 similar to UniRef100_A7PSL8 Cluster: Chromosome chr6 scaffold_28,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_28, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 437
Score = 496 bits (250), Expect = e-139
Identities = 371/397 (93%), Gaps = 12/397 (3%)
Strand = Plus / Minus
Query: 1311 tgggctgtcaatgaagaggcttagtgctgtacttttgac--cccaaaagctcccagatct 1368
|||||||||| ||||||||||||||||||||| ||| || |||||| ||||||||||||
Sbjct: 430 tgggctgtca-tgaagaggcttagtgctgtaccttttactccccaaacgctcccagatct 372
Query: 1369 ctggaacagaaga-ttgggatcaaccagaa-tcttaaa-ccttcggaagtaattgctgat 1425
||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct: 371 ctggaacagaagacttgggatca-ccagaactcttaaatccttcggaagtaattgctgat 313
Query: 1426 cctgaggctgaaacag-ctgaagaacagctcattaagcaattcatgaagaaggacttgga 1484
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctgaggc-gaaacagactgaagaacagctcattaagcaattcatgaagaaggacttgga 254
Query: 1485 aaaggtactggacagtctaaatccaagagagaagcaggtcattagatggagatttggtat 1544
||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 aaaggtaatggacagtctcaatccaagagagaagcaggtccttagatggagatttggtat 194
Query: 1545 ggatgatggaaggatgaaga-ccctgcaagagataggagaaatgttaggtgtgagtaggg 1603
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 ggatgatggaaggatgaagagccctgccagagataggagaaatgttaggtgtgagtaggg 134
Query: 1604 agagaattaggcaaattgagtcttgtgcttttaggaaactaaagaacaagaagagaaaca 1663
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 133 agagaattaggcaaactgagtcttgtgcttttaggaaactaaagaaaaagaagagaaaca 74
Query: 1664 agcatttgcag-cagtat-ttggtttcacaatcctag 1698
||| |||| |||||| |||||||||| |||||||
Sbjct: 73 gcaattcgcagccagtatcttggtttcactatcctag 37