Miyakogusa Predicted Gene

Lj1g3v3329510.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3329510.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,58.26,2e-17,seg,NULL; HMG_box,High mobility group, superfamily;
HMG-box,High mobility group, superfamily; no des,CUFF.30397.1
         (355 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Pre...   135   2e-31

>gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (37%)
          Length = 884

 Score =  135 bits (68), Expect = 2e-31
 Identities = 161/192 (83%)
 Strand = Plus / Plus

                                                                       
Query: 105 attgggtgtccagcgtcgccgtcgcaggaagaaatcagaaataaaaaggagggatcctgc 164
           |||||||||||| |||||||| |||||||||  |||||| |||| || ||| ||||||||
Sbjct: 220 attgggtgtccatcgtcgccgacgcaggaagtcatcagagataagaaagagtgatcctgc 279

                                                                       
Query: 165 tcatccaaaacccaaccgaagcggctacaatttcttctttgctgagcagcatgcaagact 224
           || ||||||||| ||| |||| || |||||||||||||||||||| || |||||||||||
Sbjct: 280 tcttccaaaaccgaacagaagtggatacaatttcttctttgctgaacaacatgcaagact 339

                                                                       
Query: 225 aaaactactaaaccaagccaaggacagggatattagcaggatgattggagaactatggaa 284
           ||| | |||  ||||||  |||||||| || || || ||||  ||||| || || |||||
Sbjct: 340 aaagccacttcaccaagggaaggacagagagatgagtaggacaattggtgacctctggaa 399

                       
Query: 285 caagttaaaaga 296
           ||||||| ||||
Sbjct: 400 caagttacaaga 411