Miyakogusa Predicted Gene
- Lj1g3v3328680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3328680.1 tr|F2EA50|F2EA50_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,46.91,3e-19,coiled-coil,NULL,CUFF.30418.1
(549 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57184 weakly similar to UniRef100_Q9FJ19 Cluster: Gen... 1080 0.0
gnl|LJGI|TC73008 weakly similar to UniRef100_Q9FJ19 Cluster: Gen... 565 e-160
gnl|LJGI|BP068629 252 2e-66
>gnl|LJGI|TC57184 weakly similar to UniRef100_Q9FJ19 Cluster: Genomic DNA, chromosome
5, TAC clone:K21P3; n=1; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 5, TAC clone:K21P3 - Arabidopsis
thaliana (Mouse-ear cress), partial (66%)
Length = 972
Score = 1080 bits (545), Expect = 0.0
Identities = 548/549 (99%)
Strand = Plus / Plus
Query: 1 atgtcgacctttttccgttcatccttgcgctcatttgccaccactgccaaatctgcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgtcgacctttttccgttcatccttgcgctcatttgccaccactgccaaatctgcacac 222
Query: 61 cacaacaatcatcgtgacaaccacaagttcctcccaccaacctcgttcctgggtagctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cacaacaatcatcgtgacaaccacaagttcctcccaccaacctcgttcctgggtagctgg 282
Query: 121 gaggcaccgaaggaccccaaggaggctgaggccaagcttgctcagcttcgcagggactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaggcaccgaaggaccccaaggaggctgaggccaagcttgctcagcttcgcagggactac 342
Query: 181 gcgaagcaggtgaaggagcttcggaaggagtacatcgaagagatggagctgatgcgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcgaagcaggtgaaggagcttcggaaggagtacatcgaagagatggagctgatgcgcctt 402
Query: 241 gagaagcagcgcaaggatgaggctcgcagggaagccctcagagtcgccaccgaagagcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagaagcagcgcaaggatgaggctcgcagggaagccctcagagtcgccaccgaagagcgc 462
Query: 301 aagaggctcaaggctcaggaggctgagatcagagcccagcaacgcaacattgaacagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagaggctcaaggctcaggaggctgagatcagagcccagcaacgcaacattgaacagcaa 522
Query: 361 caatttcgagaaacccttttaaaagaaagagcagagaaacttgaatactggaggaggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatttcgagaaacccttttaaaagaaagagcagagaaacttgaatactggaggaggaaa 582
Query: 421 gtcaaaatgcacgaggagaagaaggcagagaagaatgaattattgcgtcgacaaagttcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtcaaaatgcacgaggagaagaaggcagagaagaatgaattattgcgtcgacaaagttcg 642
Query: 481 atgtgggttgatgaagctgaaattgagaagcaaatattcgataccgtaattgctacaacg 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 atgtgggttgatgaagctgaaattgagaagcaaatattggataccgtaattgctacaacg 702
Query: 541 catttttga 549
|||||||||
Sbjct: 703 catttttga 711
>gnl|LJGI|TC73008 weakly similar to UniRef100_Q9FJ19 Cluster: Genomic DNA, chromosome
5, TAC clone:K21P3; n=1; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 5, TAC clone:K21P3 - Arabidopsis
thaliana (Mouse-ear cress), partial (46%)
Length = 477
Score = 565 bits (285), Expect = e-160
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 1 atgtcgacctttttccgttcatccttgcgctcatttgccaccactgccaaatctgcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgtcgacctttttccgttcatccttgcgctcatttgccaccactgccaaatctgcacac 252
Query: 61 cacaacaatcatcgtgacaaccacaagttcctcccaccaacctcgttcctgggtagctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cacaacaatcatcgtgacaaccacaagttcctcccaccaacctcgttcctgggtagctgg 312
Query: 121 gaggcaccgaaggaccccaaggaggctgaggccaagcttgctcagcttcgcagggactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaggcaccgaaggaccccaaggaggctgaggccaagcttgctcagcttcgcagggactac 372
Query: 181 gcgaagcaggtgaaggagcttcggaaggagtacatcgaagagatggagctgatgcgcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcgaagcaggtgaaggagcttcggaaggagtacatcgaagagatggagctgatgcgcctt 432
Query: 241 gagaagcagcgcaaggatgaggctcgcagggaagccctcagagtc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagaagcagcgcaaggatgaggctcgcagggaagccctcagagtc 477
>gnl|LJGI|BP068629
Length = 452
Score = 252 bits (127), Expect = 2e-66
Identities = 136/139 (97%)
Strand = Plus / Minus
Query: 399 acttgaatactggaggaggaaagtcaaaatgcacgaggagaagaaggcagagaagaatga 458
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 450 acttgaatactggaggaggaaagtctaaatgcacgaggagaagaaggcagagaagaatga 391
Query: 459 attattgcgtcgacaaagttcgatgtgggttgatgaagctgaaattgagaagcaaatatt 518
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attattgcgtcgaccaagttcgatgtgggttgatgaagctgaaattgagaagcaaatatt 331
Query: 519 cgataccgtaattgctaca 537
|||| ||||||||||||||
Sbjct: 330 cgattccgtaattgctaca 312