Miyakogusa Predicted Gene
- Lj1g3v3328650.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3328650.1 Non Chatacterized Hit- tr|I3SBD5|I3SBD5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.67,0,Ubiquitin
homologues,Ubiquitin; Ubiquitin associated
domain,Ubiquitin-associated/translation elongat,CUFF.30344.1
(1134 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57960 similar to UniRef100_A7PAP6 Cluster: Chromosome... 2248 0.0
gnl|LJGI|DC594730 similar to UniRef100_A7PAP6 Cluster: Chromosom... 642 0.0
gnl|LJGI|BP079439 similar to UniRef100_Q40742 Cluster: Probable ... 240 2e-62
gnl|LJGI|TC66052 similar to UniRef100_A7P372 Cluster: Chromosome... 115 6e-25
gnl|LJGI|FS345536 similar to UniRef100_A7P372 Cluster: Chromosom... 109 4e-23
gnl|LJGI|TC75382 similar to UniRef100_A7P372 Cluster: Chromosome... 66 5e-10
gnl|LJGI|TC67465 similar to UniRef100_A7P372 Cluster: Chromosome... 66 5e-10
gnl|LJGI|TC73212 similar to UniRef100_O03990 Cluster: RAD23, iso... 60 3e-08
>gnl|LJGI|TC57960 similar to UniRef100_A7PAP6 Cluster: Chromosome chr14 scaffold_9,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_9, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (82%)
Length = 1545
Score = 2248 bits (1134), Expect = 0.0
Identities = 1134/1134 (100%)
Strand = Plus / Plus
Query: 1 atgaagattaacgtcaagacactcaagggcactcactttcagatccaagttaacctacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atgaagattaacgtcaagacactcaagggcactcactttcagatccaagttaacctacaa 161
Query: 61 gactcggttgctgatgtgaagaagactatagaggtggcgcaaggtgctggtgtttaccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gactcggttgctgatgtgaagaagactatagaggtggcgcaaggtgctggtgtttaccct 221
Query: 121 gctgcgcagcaaatgcttattcatcaggggaaggtgctgaaggatgacacaaccctggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gctgcgcagcaaatgcttattcatcaggggaaggtgctgaaggatgacacaaccctggaa 281
Query: 181 gagaataatgttgctgaggatagtttcgtggtcatcatgttgagcaagaataaggtatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagaataatgttgctgaggatagtttcgtggtcatcatgttgagcaagaataaggtatca 341
Query: 241 tcaagtggagcctcaactgctgcagcggcaccaccaaatccggtgacggctccccaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcaagtggagcctcaactgctgcagcggcaccaccaaatccggtgacggctccccaacct 401
Query: 301 gcaagttctgtgcctcccacctcatcaacaccagaacctcccacttcagctgtaggacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcaagttctgtgcctcccacctcatcaacaccagaacctcccacttcagctgtaggacag 461
Query: 361 ggagcctccaattctgagcaaagtcctgttataactcctccaactgctgctgtgtccagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggagcctccaattctgagcaaagtcctgttataactcctccaactgctgctgtgtccagc 521
Query: 421 gtatatggccaagcagcttcaaatctcattgcaggaagtaatgtagaccctactgttcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtatatggccaagcagcttcaaatctcattgcaggaagtaatgtagaccctactgttcaa 581
Query: 481 cagattcttgaaatggggggaggaagttgggatcgggatactgttattcgtgctcttcgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagattcttgaaatggggggaggaagttgggatcgggatactgttattcgtgctcttcgt 641
Query: 541 gctgcatataacaatccggaacgagctgttgaatacctctattctggcattcctgaacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gctgcatataacaatccggaacgagctgttgaatacctctattctggcattcctgaacaa 701
Query: 601 gctgatgtgccagcagttgccagatcacccagtgttgggcaggcagaaaacccatcagtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gctgatgtgccagcagttgccagatcacccagtgttgggcaggcagaaaacccatcagtc 761
Query: 661 cagcctcctcaaccagctgtgcctactggtgggcccaacaccaacccactcaacctgttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cagcctcctcaaccagctgtgcctactggtgggcccaacaccaacccactcaacctgttt 821
Query: 721 ccccaaggcattcccaatatgggtgcagaggacaatgcaggcgacttggatttcttgcgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ccccaaggcattcccaatatgggtgcagaggacaatgcaggcgacttggatttcttgcgc 881
Query: 781 aacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccctcaaatcttgcag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccctcaaatcttgcag 941
Query: 841 cccatgcttcaggaactgggaaaacaaaatcctcacctaatgcagctcattcaagagcat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 cccatgcttcaggaactgggaaaacaaaatcctcacctaatgcagctcattcaagagcat 1001
Query: 901 caatctgacttcctgaatcttataaatgaacctgaaggagaagagaacccattggctgct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 caatctgacttcctgaatcttataaatgaacctgaaggagaagagaacccattggctgct 1061
Query: 961 gggatgactcaggccatcactgtcacccctgaagagaatgaggccattcaacggcttgaa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 gggatgactcaggccatcactgtcacccctgaagagaatgaggccattcaacggcttgaa 1121
Query: 1021 gatatgggatttgatcgtgatctcgtgttggaagtgttcattgcatgcaatagaaacgag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 gatatgggatttgatcgtgatctcgtgttggaagtgttcattgcatgcaatagaaacgag 1181
Query: 1081 gatctggcagccaactacctattggatcaccaaaatgagtttgacgattagttg 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 gatctggcagccaactacctattggatcaccaaaatgagtttgacgattagttg 1235
>gnl|LJGI|DC594730 similar to UniRef100_A7PAP6 Cluster: Chromosome chr14 scaffold_9,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_9, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 391
Score = 642 bits (324), Expect = 0.0
Identities = 376/392 (95%), Gaps = 1/392 (0%)
Strand = Plus / Plus
Query: 194 ctgaggatagtttcgtggtcatcatgttgagcaagaataaggtatcatcaagtggagcct 253
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgaggatagtttcatggtcatcatgttgagccagaataaggtatcatcaagtggagcct 60
Query: 254 caactgctgcagcggcaccaccaaatccggtgacggctccccaacctgcaagttctgtgc 313
|||||||||||||||||||||||||||| ||||||||||||||| | || ||||||
Sbjct: 61 caactgctgcagcggcaccaccaaatccagtgacggctccccaaggggggggt-ctgtgc 119
Query: 314 ctcccacctcatcaacaccagaacctcccacttcagctgtaggacagggagcctccaatt 373
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 ctcccacctcatcaacaccaaaacctcccacttcagctgtatgacagggagcctccaatt 179
Query: 374 ctgagcaaagtcctgttataactcctccaactgctgctgtgtccagcgtatatggccaag 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctgagcaaagtcctgttataactcctccaactgctgctgtgtccagcgtatatggccaag 239
Query: 434 cagcttcaaatctcattgcaggaagtaatgtagaccctactgttcaacagattcttgaaa 493
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 240 cagcttcaaatctcattgcaggaagtaatgtagaccctactgttccacaaattcttgaaa 299
Query: 494 tggggggaggaagttgggatcgggatactgttattcgtgctcttcgtgctgcatataaca 553
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 tggggggaggaagttgggatcgggatactggtattcgtgctcttcgtgctgcatataaca 359
Query: 554 atccggaacgagctgttgaatacctctattct 585
||||||||| ||||||||||||||||||||||
Sbjct: 360 atccggaaccagctgttgaatacctctattct 391
>gnl|LJGI|BP079439 similar to UniRef100_Q40742 Cluster: Probable DNA repair protein
RAD23; n=3; Oryza sativa|Rep: Probable DNA repair protein
RAD23 - Oryza sativa subsp. japonica (Rice), partial
(10%)
Length = 396
Score = 240 bits (121), Expect = 2e-62
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 1014 gcttgaagatatgggatttgatcgtgatctcgtgttggaagtgttcattgcatgcaatag 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcttgaagatatgggatttgatcgtgatctcgtgttggaagtgttcattgcatgcaatag 268
Query: 1074 aaacgaggatctggcagccaactacctattggatcaccaaaatgagtttgacgattagtt 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaacgaggatctggcagccaactacctattggatcaccaaaatgagtttgacgattagtt 208
Query: 1134 g 1134
|
Sbjct: 207 g 207
>gnl|LJGI|TC66052 similar to UniRef100_A7P372 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (89%)
Length = 1591
Score = 115 bits (58), Expect = 6e-25
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 476 ttcaacagattcttgaaatggggggaggaagttgggatcgggatactgttattcgtgctc 535
||||||| || ||||| ||||| |||||||| |||||||||||||||||| | |||||||
Sbjct: 671 ttcaacaaatccttgacatgggtggaggaagctgggatcgggatactgttgtccgtgctc 730
Query: 536 ttcgtgctgcatataacaatccggaacgagctgttgaatacctctattctggcattcctg 595
|||||||||| | |||||||| ||| |||||||||| ||| | ||||| ||||| ||||
Sbjct: 731 ttcgtgctgctttcaacaatcctgaaagagctgttgactacttgtattcaggcatacctg 790
Query: 596 aacaagctga 605
| ||||||||
Sbjct: 791 agcaagctga 800
Score = 85.7 bits (43), Expect = 6e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 778 cgcaacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccctcaaatcttg 837
||||||| ||||||||||||||||||| | || |||||||| || || || |||||||||
Sbjct: 979 cgcaacagtcaacagttccaagccttgcgcgctatggtgcaggctaatccacaaatcttg 1038
Query: 838 cagcccatgcttcaggaactgggaaaacaaaatcc 872
||||| ||||| || ||||| || |||||||||||
Sbjct: 1039 cagcctatgctacaagaacttggcaaacaaaatcc 1073
>gnl|LJGI|FS345536 similar to UniRef100_A7P372 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 684
Score = 109 bits (55), Expect = 4e-23
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 487 cttgaaatggggggaggaagttgggatcgggatactgttattcgtgctcttcgtgctgca 546
||||| ||||| |||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 677 cttgacatgggtggaggaagctgggatcgggatactgttgtccgtgctcttcgtgctgct 618
Query: 547 tataacaatccggaacgagctgttgaatacctctattctggcattcctgaacaagctga 605
| |||||||| ||| |||||||||| ||| | ||||| ||||| ||||| ||||||||
Sbjct: 617 ttcaacaatcctgaaagagctgttgactacttgtattcaggcatacctgagcaagctga 559
Score = 63.9 bits (32), Expect = 2e-09
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 769 gatttcttgcgcaacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccct 828
||||| || ||||||| ||||||||||||||||||| | || |||||||| || || ||
Sbjct: 389 gattttttacgcaacagtcaacagttccaagccttgcgcgctatggtgcaggctaatcca 330
Query: 829 caaatcttgcag 840
||||||||||||
Sbjct: 329 caaatcttgcag 318
>gnl|LJGI|TC75382 similar to UniRef100_A7P372 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (85%)
Length = 1313
Score = 65.9 bits (33), Expect = 5e-10
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 778 cgcaacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccctcaaatcttg 837
||||||| ||||| |||||||||||| |||| |||||||| || || || ||||| |||
Sbjct: 839 cgcaacagccaacaattccaagccttgcgagctatggtgcaggctaatccacaaatattg 898
Query: 838 cagcccatgcttcaggaactgggaaaacaaaatcctcacctaatg 882
||||| ||||| || || || || ||||| |||||||| ||||||
Sbjct: 899 cagcctatgctacaagagcttggcaaacagaatcctcatctaatg 943
Score = 60.0 bits (30), Expect = 3e-08
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 118 cctgctgcgcagcaaatgcttattcatcaggggaaggtgctgaaggatgacacaaccctg 177
||||| ||||||||||||||||||||||| ||||| || || ||||||| || ||| ||
Sbjct: 242 cctgccgcgcagcaaatgcttattcatcaagggaaagttcttaaggatggtactaccttg 301
Query: 178 gaagagaataatgttgctgaggatagtttc 207
|| || ||||| || ||||| ||||||||
Sbjct: 302 gaggaaaataaagtagctgaaaatagtttc 331
>gnl|LJGI|TC67465 similar to UniRef100_A7P372 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 730
Score = 65.9 bits (33), Expect = 5e-10
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 778 cgcaacaatcaacagttccaagccttgagagcaatggtgcaagcaaaccctcaaatcttg 837
||||||| ||||| |||||||||||| |||| |||||||| || || || ||||| |||
Sbjct: 83 cgcaacagccaacaattccaagccttgcgagctatggtgcaggctaatccacaaatattg 142
Query: 838 cagcccatgcttcaggaactgggaaaacaaaatcctcacctaatg 882
||||| ||||| || || || || ||||| |||||||| ||||||
Sbjct: 143 cagcctatgctacaagagcttggcaaacagaatcctcatctaatg 187
>gnl|LJGI|TC73212 similar to UniRef100_O03990 Cluster: RAD23, isoform I; n=1; Daucus
carota|Rep: RAD23, isoform I - Daucus carota (Carrot),
partial (27%)
Length = 630
Score = 60.0 bits (30), Expect = 3e-08
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 118 cctgctgcgcagcaaatgcttattcatcaggggaaggtgctgaaggatgacacaaccctg 177
||||| ||||||||||||||||||||||| ||||| || || ||||||| || ||| ||
Sbjct: 254 cctgccgcgcagcaaatgcttattcatcaagggaaagttcttaaggatggtactaccttg 313
Query: 178 gaagagaataatgttgctgaggatagtttc 207
|| || ||||| || ||||| ||||||||
Sbjct: 314 gaggaaaataaagtagctgaaaatagtttc 343