Miyakogusa Predicted Gene
- Lj1g3v3316260.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3316260.1 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,95.58,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.1
(546 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66013 similar to UniRef100_O65194 Cluster: Ribulose b... 894 0.0
gnl|LJGI|TC63864 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1... 892 0.0
gnl|LJGI|TC58934 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1... 852 0.0
gnl|LJGI|TC70891 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1... 712 0.0
gnl|LJGI|BP034895 similar to UniRef100_P24007 Cluster: Ribulose ... 462 e-129
gnl|LJGI|TC60984 similar to UniRef100_Q39832 Cluster: Ribulose-1... 444 e-124
gnl|LJGI|AV428935 similar to UniRef100_O65194 Cluster: Ribulose ... 410 e-114
gnl|LJGI|AV422614 homologue to UniRef100_O65194 Cluster: Ribulos... 371 e-102
gnl|LJGI|AV420075 similar to UniRef100_P32764 Cluster: Ribulose ... 278 3e-74
gnl|LJGI|AV770261 similar to UniRef100_O65194 Cluster: Ribulose ... 220 7e-57
gnl|LJGI|TC67533 similar to UniRef100_P00869 Cluster: Ribulose b... 200 6e-51
gnl|LJGI|DC597768 similar to UniRef100_P00865 Cluster: Ribulose ... 137 8e-32
gnl|LJGI|AV774656 similar to UniRef100_P24007 Cluster: Ribulose ... 115 3e-25
gnl|LJGI|AV773128 similar to UniRef100_O65194 Cluster: Ribulose ... 98 7e-20
gnl|LJGI|AV765033 similar to UniRef100_P00869 Cluster: Ribulose ... 74 1e-12
>gnl|LJGI|TC66013 similar to UniRef100_O65194 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Medicago sativa|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Medicago sativa
(Alfalfa), partial (96%)
Length = 844
Score = 894 bits (451), Expect = 0.0
Identities = 525/549 (95%), Gaps = 3/549 (0%)
Strand = Plus / Plus
Query: 1 atggcttcctctatgatcacttcctccgc---cgtcaccaccattaatggtgcctccccg 57
|||||||||||||||||||| ||||| || || |||||||||||| |||||||| |||
Sbjct: 39 atggcttcctctatgatcacctcctcagctgccgccaccaccattaaaggtgcctctccg 98
Query: 58 gcacaggccaacatggtggctccattcactggcctcaagtccatggctggcttcccagtt 117
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gcacaggccagcatggtggctccattcactggcctcaagtccatggctggcttcccagtt 158
Query: 118 agaaagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatg 177
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 159 agaaagacaaacaatgacattacctccattgcaaacaacggtggaagagtacaatgcatg 218
Query: 178 caggtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactc 237
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 219 caggtgtggcctcctgttggcaagaagaagttcgagactctttcataccttccaccactc 278
Query: 238 accacagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgc 297
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 279 accacagagcaactcttaaaggaagtagaataccttcttaggaagggttgggttccttgc 338
Query: 298 ttggaatttgagacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatac 357
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttggaattcgagacagagaaaggctttgtctaccgtgagaaccacaagtcacctggatac 398
Query: 358 tatgacggacgctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 399 tatgacggacgctactggaccatgtggaagctccccatgtttgggtgcagtgatgctacc 458
Query: 418 caggtgttgaaggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatc 477
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 459 caggtgttgaaggaacttgatgaggctgtgaaggcataccccaacgcttttgtgcgcatc 518
Query: 478 attggattcgacaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagca 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 519 attggattcgacaatgttcgccaagtgcagtgcatcagtttcattgcacacagaccagca 578
Query: 538 ggctactaa 546
|||||||||
Sbjct: 579 ggctactaa 587
>gnl|LJGI|TC63864 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1,5-bisphosphate
carboxylase small subunit precursor; n=1; Cicer
arietinum|Rep: Ribulose 1,5-bisphosphate carboxylase
small subunit precursor - Cicer arietinum (Chickpea)
(Garbanzo), partial (98%)
Length = 860
Score = 892 bits (450), Expect = 0.0
Identities = 522/546 (95%)
Strand = Plus / Plus
Query: 1 atggcttcctctatgatcacttcctccgccgtcaccaccattaatggtgcctccccggca 60
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||
Sbjct: 41 atggcttcctctatgatcacctcctctgccgtcaccaccattaacagtgcctctccggca 100
Query: 61 caggccaacatggtggctccattcactggcctcaagtccatggctggcttcccagttaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 101 caggccaacatggtggctccattcactggcctcaagtccatggctggcttcccagtaaga 160
Query: 121 aagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatgcag 180
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 161 aaggtcaacaatgacattacctccattgcaaacaacggtggaagagtacaatgcatgcag 220
Query: 181 gtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcacc 240
|||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 221 gtgtggcctcctattggcaagaagaagttcgagactctttcataccttccaccactcacc 280
Query: 241 acagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttg 300
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 281 acagagcaactcttaaaggaagtagaataccttctcaggaaggggtgggttccttgcttg 340
Query: 301 gaatttgagacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactat 360
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gagtttgagacagagaaaggctttgtctaccgtgagaaccacaagtcacctggatactat 400
Query: 361 gacggacgctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccag 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 401 gacggacgctactggaccatgtggaagctccccatgtttggatgcagtgatgctacccag 460
Query: 421 gtgttgaaggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcatt 480
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 461 gtgttgaaggaacttgatgaggctgtgaaggcataccccaacgcttttgtgcgcatcatt 520
Query: 481 ggattcgacaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggc 540
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 521 ggattcgacaatgttcgccaagtgcagtgcatcagtttcattgcacacagaccagcaggc 580
Query: 541 tactaa 546
||||||
Sbjct: 581 tactaa 586
>gnl|LJGI|TC58934 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1,5-bisphosphate
carboxylase small subunit precursor; n=1; Cicer
arietinum|Rep: Ribulose 1,5-bisphosphate carboxylase
small subunit precursor - Cicer arietinum (Chickpea)
(Garbanzo), partial (98%)
Length = 791
Score = 852 bits (430), Expect = 0.0
Identities = 517/546 (94%)
Strand = Plus / Plus
Query: 1 atggcttcctctatgatcacttcctccgccgtcaccaccattaatggtgcctccccggca 60
||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 33 atggcttcctctatgatgacgtcctccgctgtcaccaccattaacggtgcctctccggca 92
Query: 61 caggccaacatggtggctccattcactggcctcaagtccatggctggcttcccagttaga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 caggccagcatggtggctccattcactggcctcaagtccatggctggcttcccagttaga 152
Query: 121 aagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatgcag 180
||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 153 aagacaaacaatgacattacctccattgcaaacaacggtggaagagtacaatgcatgcag 212
Query: 181 gtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcacc 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 213 gtgtggcctcctgttggcaagaagaagttcgagactctttcatacctgccaccactcacc 272
Query: 241 acagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttg 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 273 acagagcaactgttaaaggaagttgaataccttcttaggaaggggtgggttccttgcttg 332
Query: 301 gaatttgagacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactat 360
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 333 gaatttgagacagagaaaggctttgtttaccgtgagaaccacaagtcaccgggatactat 392
Query: 361 gacggacgctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccag 420
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 393 gacggacggtactggaccatgtggaagctgcccatgtttggctgcagtgatgctgctcag 452
Query: 421 gtgttgaaggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcatt 480
||||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct: 453 gtgttgaaggagcttgatgaggctgtgaaggcataccccaatgctttcgttcgcatcatc 512
Query: 481 ggattcgacaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggc 540
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 513 ggattcgacaacgttcgccaagtgcagtgcatcagcttcattgctcacaggcctgcaggc 572
Query: 541 tactaa 546
||||||
Sbjct: 573 tactaa 578
>gnl|LJGI|TC70891 similar to UniRef100_Q9ZP07 Cluster: Ribulose 1,5-bisphosphate
carboxylase small subunit precursor; n=1; Cicer
arietinum|Rep: Ribulose 1,5-bisphosphate carboxylase
small subunit precursor - Cicer arietinum (Chickpea)
(Garbanzo), partial (64%)
Length = 499
Score = 712 bits (359), Expect = 0.0
Identities = 359/359 (100%)
Strand = Plus / Plus
Query: 188 ctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcaccacagagc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcaccacagagc 60
Query: 248 aactattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttg 120
Query: 308 agacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggac 180
Query: 368 gctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttga 240
Query: 428 aggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcg 300
Query: 488 acaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 359
>gnl|LJGI|BP034895 similar to UniRef100_P24007 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Pyrus pyrifolia|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Pyrus pyrifolia
(Japanese pear) (Pyrus serotina), partial (40%)
Length = 500
Score = 462 bits (233), Expect = e-129
Identities = 233/233 (100%)
Strand = Plus / Minus
Query: 314 agaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacgctact 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacgctact 308
Query: 374 ggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttgaaggaac 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttgaaggaac 248
Query: 434 ttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcgacaatg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcgacaatg 188
Query: 494 ttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 135
>gnl|LJGI|TC60984 similar to UniRef100_Q39832 Cluster: Ribulose-1,5-bisphosphate
carboxylase small subunit precursor; n=1; Glycine
max|Rep: Ribulose-1,5-bisphosphate carboxylase small
subunit precursor - Glycine max (Soybean), partial (98%)
Length = 789
Score = 444 bits (224), Expect = e-124
Identities = 421/486 (86%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 64 gccaacatggtggctccattcactggcctcaagtccatggctggcttcccagtta---ga 120
||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||| ||
Sbjct: 83 gccaacatggttgccccattcactggtctcaaatccatggctggtttcccagttacaaga 142
Query: 121 aagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatgcag 180
||| |||||| |||||| ||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 143 aaggccaacaatgacatcacctccattgcaagcaatggtggaagagtcaactgcatgcag 202
Query: 181 gtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcacc 240
||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 203 gtgtggcctccaattggcaagaagaagtttgagaccctttcttaccttccaccactcacc 262
Query: 241 acagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttg 300
|||||| | ||||||||| ||||||||| | |||||||| |||||||||||||||
Sbjct: 263 gtggagcaattggcaaaggaagtagaataccttatcaggaagggatgggttccttgcttg 322
Query: 301 gaatttgagacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactat 360
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 323 gaatttgagactgagaaagggtttgtgtaccgtgagaaccacaagtcaccaggatactat 382
Query: 361 gacggacgctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccag 420
|| ||||| |||||||| ||||||||||| ||||||||||| || ||||||| | |||
Sbjct: 383 gatggacgttactggacaatgtggaagctgcccatgtttggaaccactgatgcttctcag 442
Query: 421 gtgttgaaggaacttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcatt 480
|| |||||||||||||| ||||| |||||||||||| | ||| || | || |||||
Sbjct: 443 gttttgaaggaacttgaggaggccaagaaggcataccccaacgccttcatccgtatcatc 502
Query: 481 ggattcgacaatgttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggc 540
||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct: 503 ggattcgacaacaagcgccaagtgcagtgcatcagtttcatcgcacacaggccagaaggc 562
Query: 541 tactaa 546
||||||
Sbjct: 563 tactaa 568
>gnl|LJGI|AV428935 similar to UniRef100_O65194 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Medicago sativa|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Medicago sativa
(Alfalfa), partial (38%)
Length = 339
Score = 410 bits (207), Expect = e-114
Identities = 263/275 (95%), Gaps = 5/275 (1%)
Strand = Plus / Plus
Query: 189 tcctgttggcaagaagaagtttgagactctttcatacctgccaccactcaccacagagca 248
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgttggcaagaagaaatttgagactctttcatacctgccaccactcaccacagagca 60
Query: 249 actattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttga 308
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 actattaaaggaagtggaataccttcttatgaaggggtgggttccttgcttggaatttga 120
Query: 309 gacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacg 180
Query: 369 ctactggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttgaa 428
||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 181 ctactggaccatgtggaagct-cccatg-ttgggtgcagtgaagctgcccaagtg-tgaa 237
Query: 429 ggaacttgatgaggctgtgaaggcatacccgaccg 463
|||| |||| | |||||||||| |||||||||||
Sbjct: 238 ggaaactgat-aagctgtgaagg-atacccgaccg 270
>gnl|LJGI|AV422614 homologue to UniRef100_O65194 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Medicago sativa|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Medicago sativa
(Alfalfa), partial (34%)
Length = 276
Score = 371 bits (187), Expect = e-102
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 189 tcctgttggcaagaagaagtttgagactctttcatacctgccaccactcaccacagagca 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgttggcaagaagaagtttgagactctttcatacctgccaccactcaccacagagca 60
Query: 249 actattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttga 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actattaaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttga 120
Query: 309 gacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacggagaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacg 180
Query: 369 ctactgg 375
|||||||
Sbjct: 181 ctactgg 187
>gnl|LJGI|AV420075 similar to UniRef100_P32764 Cluster: Ribulose bisphosphate
carboxylase small chain 3, chloroplast precursor; n=1;
Solanum tuberosum|Rep: Ribulose bisphosphate carboxylase
small chain 3, chloroplast precursor - Solanum tuberosum
(Potato), partial (55%)
Length = 384
Score = 278 bits (140), Expect = 3e-74
Identities = 254/292 (86%)
Strand = Plus / Plus
Query: 255 aaaggaagtggaataccttcttaggaaggggtgggttccttgcttggaatttgagacgga 314
||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| ||
Sbjct: 18 aaaggaagtagaataccttatcaggaagggatgggttccttgcttggaatttgagactga 77
Query: 315 gaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacgctactg 374
|||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 78 gaaagggtttgtgtaccgtgagaaccacaagtcaccaggatactatgatggacgttactg 137
Query: 375 gaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttgaaggaact 434
||| ||||||||||| ||||||||||| || ||||||| | ||||| |||||||||||
Sbjct: 138 gacaatgtggaagctgcccatgtttggaaccactgatgcttctcaggttttgaaggaact 197
Query: 435 tgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcgacaatgt 494
||| ||||| |||||||||||| | ||| || | || ||||| |||||||||||
Sbjct: 198 tgaggaggccaagaaggcataccccaacgccttcatccgtatcatcggattcgacaacaa 257
Query: 495 tcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 546
|||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 258 gcgccaagtgcagtgcatcagtttcatcgcacacaggccagaaggctactaa 309
>gnl|LJGI|AV770261 similar to UniRef100_O65194 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Medicago sativa|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Medicago sativa
(Alfalfa), partial (47%)
Length = 543
Score = 220 bits (111), Expect = 7e-57
Identities = 217/252 (86%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 64 gccaacatggtggctccattcactggcctcaagtccatggctggcttcccagtta----g 119
||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||| |
Sbjct: 59 gccaacatggttgccccattcactggtctcaaatccatggctggtttcccagttacaagg 118
Query: 120 aaagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatgca 179
|||| |||||| |||||| ||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 119 aaaggccaacaatgacatcacctccattgcaagcaatggtggaagagtcaactgcatgca 178
Query: 180 ggtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcac 239
|||||||||||| | |||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 179 ggtgtggcctccaataggcaagaagaagttcgagaccctttcttaccttccaccactcac 238
Query: 240 cacagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgctt 299
| |||||| ||||||||| ||||||||| | |||||||| ||||||||||||||
Sbjct: 239 cgtggagcaataggcaaaggaagtagaataccttatcaggaagggatgggttccttgctt 298
Query: 300 ggaatttgagac 311
||||||||||||
Sbjct: 299 ggaatttgagac 310
>gnl|LJGI|TC67533 similar to UniRef100_P00869 Cluster: Ribulose bisphosphate
carboxylase small chain 3C, chloroplast precursor; n=2;
Pisum sativum|Rep: Ribulose bisphosphate carboxylase
small chain 3C, chloroplast precursor - Pisum sativum
(Garden pea), partial (43%)
Length = 664
Score = 200 bits (101), Expect = 6e-51
Identities = 200/233 (85%)
Strand = Plus / Plus
Query: 314 agaaaggctttgtctaccgtgagaaccacaagtcacctggatactatgacggacgctact 373
||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 158 agaaagggtttgtgtaccgtgagaaccacaagtcaccaggatactatgatggacgttact 217
Query: 374 ggaccatgtggaagctccccatgtttgggtgcagtgatgctgcccaggtgttgaaggaac 433
|||| ||||||||||| ||||||||||| || ||||||| | ||||| ||||||||||
Sbjct: 218 ggacaatgtggaagctgcccatgtttggaaccactgatgcttctcaggttttgaaggaac 277
Query: 434 ttgatgaggctgtgaaggcatacccgaccgcttttgtgcgcatcattggattcgacaatg 493
|||| ||||| |||||||||||| | ||| || | || ||||| |||||||||||
Sbjct: 278 ttgaggaggccaagaaggcataccccaacgccttcatccgtatcatcggattcgacaaca 337
Query: 494 ttcgccaagtgcagtgcatcagcttcattgcacacaggccagcaggctactaa 546
|||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 338 agcgccaagtgcagtgcatcagtttcatcgcacacaggccagaaggctactaa 390
>gnl|LJGI|DC597768 similar to UniRef100_P00865 Cluster: Ribulose bisphosphate
carboxylase small chain 1, chloroplast precursor; n=1;
Glycine max|Rep: Ribulose bisphosphate carboxylase small
chain 1, chloroplast precursor - Glycine max (Soybean),
partial (56%)
Length = 573
Score = 137 bits (69), Expect = 8e-32
Identities = 117/133 (87%)
Strand = Plus / Plus
Query: 179 aggtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactca 238
||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 322 aggtgtggcctccaattggcaagaagaagtttgagaccctttcttaccttccaccactca 381
Query: 239 ccacagagcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgct 298
|| |||||| | ||||||||| ||||||||| | |||||||| |||||||||||||
Sbjct: 382 ccgtggagcaattggcaaaggaagtagaataccttatcaggaagggatgggttccttgct 441
Query: 299 tggaatttgagac 311
|||||||||||||
Sbjct: 442 tggaatttgagac 454
Score = 119 bits (60), Expect = 2e-26
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 64 gccaacatggtggctccattcactggcctcaagtccatggctggcttcccagtta---ga 120
||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||| ||
Sbjct: 60 gccaacatggttgccccattcactggtctcaaatccatggctggtttcccagttacaaga 119
Query: 121 aagaccaacactgacattacctccattgcaagcaacggtggaagagtacaatgcatgcag 180
||| |||||| |||||| ||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 120 aaggccaacaatgacatcacctccattgcaagcaatggtggaagagtcaactgcatgcag 179
Query: 181 gt 182
||
Sbjct: 180 gt 181
>gnl|LJGI|AV774656 similar to UniRef100_P24007 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Pyrus pyrifolia|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Pyrus pyrifolia
(Japanese pear) (Pyrus serotina), partial (32%)
Length = 456
Score = 115 bits (58), Expect = 3e-25
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 330 ccgtgagaaccacaagtcacctggatactatgacggacgctactggaccatgtggaagct 389
||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 444 ccgtgagaaccacaagtcaccaggatactatgatggacggtactggaccatctggaagct 385
Query: 390 ccccatgtttgggtgcagtgatgctgcccaggtgttgaaggaacttgatgaggc 443
|||||||||||| | ||||||| ||||| |||||||||||||| |||||
Sbjct: 384 gcccatgtttgggacccctgatgcttttcaggttttgaaggaacttgaggaggc 331
>gnl|LJGI|AV773128 similar to UniRef100_O65194 Cluster: Ribulose bisphosphate
carboxylase small chain, chloroplast precursor; n=1;
Medicago sativa|Rep: Ribulose bisphosphate carboxylase
small chain, chloroplast precursor - Medicago sativa
(Alfalfa), partial (24%)
Length = 531
Score = 97.6 bits (49), Expect = 7e-20
Identities = 112/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 181 gtgtggcctcctgttggcaagaagaagtttgagactctttcatacctgccaccactcacc 240
||||||||||| | |||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 144 gtgtggcctccaatgggcaagaagaagttcgagaccctttcttaccttccaccactcacc 203
Query: 241 acag-agcaactattaaaggaagtggaataccttcttaggaaggggtgggttccttgctt 299
| | ||||| ||||||||| |||||||| | |||||||| ||||||||||||||
Sbjct: 204 gcggcagcaatnggcaaaggaagtacaataccttatcaggaagggatgggttccttgctt 263
Query: 300 ggaatttgagac 311
||||||||||||
Sbjct: 264 ggaatttgagac 275
>gnl|LJGI|AV765033 similar to UniRef100_P00869 Cluster: Ribulose bisphosphate
carboxylase small chain 3C, chloroplast precursor; n=2;
Pisum sativum|Rep: Ribulose bisphosphate carboxylase
small chain 3C, chloroplast precursor - Pisum sativum
(Garden pea), partial (27%)
Length = 479
Score = 73.8 bits (37), Expect = 1e-12
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 332 gtgagaaccacaagtcacctggatactatgacggacgctactggaccatgtggaagctcc 391
|||||| |||||||||||| ||||||||||| ||||| ||||| | ||||||||||| |
Sbjct: 436 gtgagagccacaagtcaccaggatactatgatggacgtaactggccaatgtggaagctgc 377
Query: 392 ccatgtttg 400
|||||||||
Sbjct: 376 ccatgtttg 368