Miyakogusa Predicted Gene

Lj1g3v3218010.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3218010.2 tr|C1E8G9|C1E8G9_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59370
,37.24,3e-17,HOMEOBOX_2,Homeodomain; Homeodomain,Homeodomain;
Homeobox,Homeodomain; no description,Homeodomain-li,CUFF.30213.2
         (771 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS343982 similar to UniRef100_Q6S3E0 Cluster: Homeodoma...   704   0.0  

>gnl|LJGI|FS343982 similar to UniRef100_Q6S3E0 Cluster: Homeodomain protein HB2; n=2;
           Populus|Rep: Homeodomain protein HB2 - Populus tomentosa
           (Chinese white poplar), partial (43%)
          Length = 570

 Score =  704 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 44  gttggattccgaacacgaacgcgaacctcatgaccgacgagcaagtcgaaacgctgcgca 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gttggattccgaacacgaacgcgaacctcatgaccgacgagcaagtcgaaacgctgcgca 271

                                                                       
Query: 104 agcaaatcgccgtttactccaccatctgcgagcaactcattgacatgcacaaaacgctct 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agcaaatcgccgtttactccaccatctgcgagcaactcattgacatgcacaaaacgctct 331

                                                                       
Query: 164 caactcaccaagatctcgctggtgttaggctgggaggtatgtactgtgacccgttgatgg 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caactcaccaagatctcgctggtgttaggctgggaggtatgtactgtgacccgttgatgg 391

                                                                       
Query: 224 cttctggtggccataaaataagttcaaggcagcggtggacgccgacagcggtgcagctgc 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cttctggtggccataaaataagttcaaggcagcggtggacgccgacagcggtgcagctgc 451

                                                                       
Query: 284 agattctggagcgaatatttgaagctgggactggaactcccagcaaggagaagatcaagg 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agattctggagcgaatatttgaagctgggactggaactcccagcaaggagaagatcaagg 511

                                                                      
Query: 344 agataactgctgatctcagccagcacggtcaaatatctgaaactaatgtctataattgg 402
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 512 agataactgctgatctcagccagcacggtcaaatatctgatactaatgtctataattgg 570