Miyakogusa Predicted Gene

Lj1g3v3207820.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3207820.1 tr|A9RIX8|A9RIX8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115006,51.28,0.029, ,CUFF.30188.1
         (112 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO037486 similar to UniRef100_P0C5B6 Cluster: 4-coumara...    96   5e-20
gnl|LJGI|TC61588 similar to UniRef100_A7NVS8 Cluster: Chromosome...    96   5e-20

>gnl|LJGI|GO037486 similar to UniRef100_P0C5B6 Cluster: 4-coumarate--CoA ligase-like
           4; n=1; Arabidopsis thaliana|Rep: 4-coumarate--CoA
           ligase-like 4 - Arabidopsis thaliana (Mouse-ear cress),
           partial (21%)
          Length = 470

 Score = 95.6 bits (48), Expect = 5e-20
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttaagaacagaggatatttgc-acattgataatgatgaatttttacttatgattga 59
           ||||||||||||||  ||||||||| |||||||||||||||  |||||| ||||  ||||
Sbjct: 172 atggttaagaacaggagatatttgctacattgataatgatggctttttatttatcgttga 231

                                                   
Query: 60  tcggttgaaagagctaatcaaatacaaggaaaatcaggta 99
           |||  |||||||||||||||||||||||| | ||||||||
Sbjct: 232 tcgcctgaaagagctaatcaaatacaagggatatcaggta 271


>gnl|LJGI|TC61588 similar to UniRef100_A7NVS8 Cluster: Chromosome chr18 scaffold_1,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_1, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (89%)
          Length = 1961

 Score = 95.6 bits (48), Expect = 5e-20
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggttaagaacagaggatatttgc-acattgataatgatgaatttttacttatgattga 59
            ||||||||||||||  ||||||||| |||||||||||||||  |||||| ||||  ||||
Sbjct: 1342 atggttaagaacaggagatatttgctacattgataatgatggctttttatttatcgttga 1401

                                                    
Query: 60   tcggttgaaagagctaatcaaatacaaggaaaatcaggta 99
            |||  |||||||||||||||||||||||| | ||||||||
Sbjct: 1402 tcgcctgaaagagctaatcaaatacaagggatatcaggta 1441