Miyakogusa Predicted Gene
- Lj1g3v3206750.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3206750.1 tr|G7KKP9|G7KKP9_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_6g0,29.55,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; PPR,Pentatricopeptide repeat; PPR:
pentatricopeptid,CUFF.30204.1
(865 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Ch... 369 e-101
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 155 5e-37
gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 133 2e-30
gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Ch... 119 3e-26
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 96 4e-19
gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Ch... 88 1e-16
gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Te... 82 7e-15
>gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined
scaffold_1129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 688
Score = 369 bits (186), Expect = e-101
Identities = 423/502 (84%)
Strand = Plus / Minus
Query: 357 ttctcttattgatggtttgtgcaaattagaaagatcctttgatgcctggaagcttgttaa 416
||||||||| |||||||||||||||| || ||| | |||||| ||| | |||||| |
Sbjct: 659 ttctcttatagatggtttgtgcaaatcagggagaatatctgatgcttgggatcttgttga 600
Query: 417 tgagatgaatcatagaggtataccacctaatgttatcacttacaaccctttactggatgt 476
||||||| || ||||||| ||||||| |||| ||||| ||||| ||||| ||||||
Sbjct: 599 tgagatgcattgtagaggtcaaccacctgatgtaatcacatacaattctttattggatgc 540
Query: 477 tttatgcaaaagccatcatgttgacagggcaattgctttaatcaagaaaattgaagaaca 536
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||
Sbjct: 539 tttatgcaaaagccatcatgttgacagggcaatttctttgatcaagaaaatgaaagacca 480
Query: 537 gggtattcagcctaatatgtacacatacactgtacttatggatggactatgcaaagtagg 596
|||| |||| ||| ||| ||||||||| | |||||||||||||||||||||||| |||
Sbjct: 479 gggtcttcaaccttcgatgcacacatacaatatacttatggatggactatgcaaagcagg 420
Query: 597 aagacttaaggatgctcaggaaatttttcaggatattttgattaaaggctacaatttaaa 656
||| || || |||| || || ||||||||||| |||| |||||||||||||||||| |
Sbjct: 419 cagagttgagaatgcacaagaggtttttcaggatcttttaattaaaggctacaatttaga 360
Query: 657 tgtccggacatattcagttatgatcgatgggtattgtaaagagggtttgtttgatgaagc 716
||| ||| | ||| || ||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 359 tgtacggtcgtatacaattatgattaatgggctttgtaaagagggcttgtttgatgaagc 300
Query: 717 attgatattgatgtcaaaaatggaaagcagcggttgtattcctgatgctgtaacttatgg 776
||||| | |||||||||||||||||| || |||||| || ||| | |||||||||||||
Sbjct: 299 attgacactgatgtcaaaaatggaaaacaacggttgcatccctaacgctgtaacttatga 240
Query: 777 aataattattcgtgctttgtttaaaaaaggtgagaatgagaaggcagagaagcttcttcg 836
|||||| ||||||||| | ||| |||||||||| |||| |||| |||||||||||| ||
Sbjct: 239 aataataattcgtgctctctttcaaaaaggtgacaatgttaaggtagagaagcttctccg 180
Query: 837 tgaaatggttgctagaagtcta 858
|||||||| ||||||| |||||
Sbjct: 179 tgaaatggctgctagaggtcta 158
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 155 bits (78), Expect = 5e-37
Identities = 234/286 (81%)
Strand = Plus / Plus
Query: 558 cacatacactgtacttatggatggactatgcaaagtaggaagacttaaggatgctcagga 617
|||||||| | |||||||||||||||| ||||||| ||||||||||||| |||| || ||
Sbjct: 19 cacatacagtatacttatggatggactgtgcaaagaaggaagacttaagaatgcacaaga 78
Query: 618 aatttttcaggatattttgattaaaggctacaatttaaatgtccggacatattcagttat 677
||||||||||| |||| | ||||||||| || ||| ||||| || |||| | ||||
Sbjct: 79 tgtttttcaggatcttttaactaaaggctatcatgtaactgtcccgatatatactattat 138
Query: 678 gatcgatgggtattgtaaagagggtttgtttgatgaagcattgatattgatgtcaaaaat 737
|||| ||||| ||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 139 gatcaatgggctttgtaaagagggtttgtttgatgaagcattggccttgctgtctaaaat 198
Query: 738 ggaaagcagcggttgtattcctgatgctgtaacttatggaataattattcgtgctttgtt 797
|||| || ||||| || ||| ||||| |||||| | || ||| ||||||||| | ||
Sbjct: 199 ggaagacaatggttgcatgcctaatgctataactttcgaaacaatcattcgtgctctatt 258
Query: 798 taaaaaaggtgagaatgagaaggcagagaagcttcttcgtgaaatg 843
| | || ||||||||| | | ||||||||| ||||| |||||||||
Sbjct: 259 tgagaagggtgagaattatatggcagagaaacttctacgtgaaatg 304
>gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (9%)
Length = 527
Score = 133 bits (67), Expect = 2e-30
Identities = 139/163 (85%)
Strand = Plus / Minus
Query: 690 ttgtaaagagggtttgtttgatgaagcattgatattgatgtcaaaaatggaaagcagcgg 749
|||||||||||| ||||||||||||||||||| ||||||||| ||||||||| || ||
Sbjct: 463 ttgtaaagagggcttgtttgatgaagcattgacattgatgtcgaaaatggaagacaatgg 404
Query: 750 ttgtattcctgatgctgtaacttatggaataattattcgtgctttgtttaaaaaaggtga 809
||| || | |||| | |||||| || || ||||||| |||| | ||| ||||||||||
Sbjct: 403 ttgcatccatgatccaataacttttgaaacaattatttctgctctttttgaaaaaggtga 344
Query: 810 gaatgagaaggcagagaagcttcttcgtgaaatggttgctaga 852
||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 343 aaatgataaggcagagaagcttcttcgtgaaatgattgctaga 301
>gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 576
Score = 119 bits (60), Expect = 3e-26
Identities = 222/276 (80%)
Strand = Plus / Minus
Query: 577 gatggactatgcaaagtaggaagacttaaggatgctcaggaaatttttcaggatattttg 636
||||||||||||||||| ||||| |||||| ||| || || |||||||||| | |||||
Sbjct: 313 gatggactatgcaaagttggaaggcttaagattgcccaagagatttttcaggttcttttg 254
Query: 637 attaaaggctacaatttaaatgtccggacatattcagttatgatcgatgggtattgtaaa 696
| |||||||||||||||||||| ||| ||| | ||||||||| ||||||||||||||
Sbjct: 253 agcgaaggctacaatttaaatgtcatgacgtatactgttatgatcaatgggtattgtaaa 194
Query: 697 gagggtttgtttgatgaagcattgatattgatgtcaaaaatggaaagcagcggttgtatt 756
|| ||||| ||||||| || | || |||||||||||||| || ||||| |||
Sbjct: 193 gaaggtttacttgatgaggctcaggccctgctgtcaaaaatggaagacaatggttgcatt 134
Query: 757 cctgatgctgtaacttatggaataattattcgtgctttgtttaaaaaaggtgagaatgag 816
||| ||||||| | || | || ||| ||| ||||| | ||| ||||| |||||||||
Sbjct: 133 cctaatgctgtgaattttcaaacaataatttgtgctctctttgaaaaaaatgagaatgat 74
Query: 817 aaggcagagaagcttcttcgtgaaatggttgctaga 852
|||||||||| ||| ||||||||||| ||||||||
Sbjct: 73 aaggcagagagactttttcgtgaaatgattgctaga 38
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 95.6 bits (48), Expect = 4e-19
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 33 tacttttaatatattggttgaggctttatgtaaggaaggaaatgtgaaagaagcaaaaaa 92
|||||||||||| ||||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 390 tacttttaatattctggttgatgggttatgtaaggaaggaaaggtgaaagaagctaaaaa 449
Query: 93 tgtgtttgctgtgatggtgaaacaaggtctggaacctaatattgttagttatagttctct 152
|||||| ||||||||| ||||| ||||| | | ||| ||||| | | ||| | |||| |
Sbjct: 450 tgtgttagctgtgatgatgaaagaaggtgtaaagcctgatattttcacttacaattctat 509
Query: 153 catggatgggta 164
||||||||||||
Sbjct: 510 catggatgggta 521
>gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Chromosome chr2
scaffold_140, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_140, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 300
Score = 87.7 bits (44), Expect = 1e-16
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 37 tttaatatattggttgaggctttatgtaaggaaggaaatgtgaaagaagcaaaaaatgtg 96
||||||||||||||||| |||||||||||| ||||||| |||||| | || || ||||||
Sbjct: 54 tttaatatattggttgatgctttatgtaagaaaggaaaggtgaaacatgctaagaatgtg 113
Query: 97 tttgctgtgatggtgaaacaaggt 120
|| ||||||||| | |||||||||
Sbjct: 114 ttggctgtgatgataaaacaaggt 137
>gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (12%)
Length = 528
Score = 81.8 bits (41), Expect = 7e-15
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 551 atatgtacacatacactgtacttatggatggactatgcaaagtaggaagacttaaggatg 610
||||||||||||||| | || |||| ||||||||||||||| |||||| | |||||||
Sbjct: 424 atatgtacacatacaatataattattgatggactatgcaaaagtggaagagtaaaggatg 365
Query: 611 ctcaggaaatttttcaggatattttgattaaaggcta 647
| || || ||||||||||| ||||||||||||||||
Sbjct: 364 cacaagagctttttcaggatcttttgattaaaggcta 328