Miyakogusa Predicted Gene

Lj1g3v3194570.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3194570.1 tr|Q6ZDL1|Q6ZDL1_ORYSJ Oxygen evolving complex
protein-like OS=Oryza sativa subsp. japonica
GN=P0404,60.53,2e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.30182.1
         (420 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64011 similar to UniRef100_A7PJ10 Cluster: Chromosome...   652   0.0  

>gnl|LJGI|TC64011 similar to UniRef100_A7PJ10 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (80%)
          Length = 822

 Score =  652 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  cagaagcatggtgcttctcgttcacctagaagagaaggcatttccttcactgtcaaagct 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  cagaagcatggtgcttctcgttcacctagaagagaaggcatttccttcactgtcaaagct 130

                                                                       
Query: 73  gcccatgaaccttcagcttcttcagctgggtttctttctcaagatagaccagggaggcgc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcccatgaaccttcagcttcttcagctgggtttctttctcaagatagaccagggaggcgc 190

                                                                       
Query: 133 gaagtgattgccattgggactactgccccattagtatttctgttcagccaaaactcaagc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaagtgattgccattgggactactgccccattagtatttctgttcagccaaaactcaagc 250

                                                                       
Query: 193 tcttttgctgcagaaaataagaaaggatttttgccagttacggaccagaaagatggatat 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcttttgctgcagaaaataagaaaggatttttgccagttacggaccagaaagatggatat 310

                                                                       
Query: 253 acatttatctaccctttcgggtggcaggaagtatcgattgagggtcaagataaggtgttc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acatttatctaccctttcgggtggcaggaagtatcgattgagggtcaagataaggtgttc 370

                                        
Query: 313 aaagatgtcattgaaccgctggaaagcgt 341
           |||||||||||||||||||||||||||||
Sbjct: 371 aaagatgtcattgaaccgctggaaagcgt 399



 Score =  155 bits (78), Expect = 3e-37
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                       
Query: 343 tgggcctcctcaacaggttggagaaactctgataaaaagggttttggcccctccaaacca 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggcctcctcaacaggttggagaaactctgataaaaagggttttggcccctccaaacca 504

                             
Query: 403 gaaaacgaagataattga 420
           ||||||||||||||||||
Sbjct: 505 gaaaacgaagataattga 522