Miyakogusa Predicted Gene

Lj1g3v3102660.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3102660.1 tr|Q52ZI8|Q52ZI8_PEA CONSTANS-LIKE a OS=Pisum
sativum GN=COLa PE=2 SV=1,79.02,0,B-Box-type zinc finger,Zinc finger,
B-box; seg,NULL; ZF_BBOX,Zinc finger, B-box; CCT,CCT domain;
FAM,NODE_53498_length_1238_cov_66.840874.path2.1
         (1200 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV408097 similar to UniRef100_Q52ZI8 Cluster: CONSTANS-...   323   1e-87
gnl|LJGI|AV769164 UniRef100_Q52ZI8 Cluster: CONSTANS-LIKE a; n=1...   157   2e-37

>gnl|LJGI|AV408097 similar to UniRef100_Q52ZI8 Cluster: CONSTANS-LIKE a; n=1; Pisum
           sativum|Rep: CONSTANS-LIKE a - Pisum sativum (Garden
           pea), partial (9%)
          Length = 231

 Score =  323 bits (163), Expect = 1e-87
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttggagcatgatctcttcacctccacctccaccaccactgtcaaggccaagtttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  atgttggagcatgatctcttcacctccacctccaccaccactgtcaaggccaagtttccg 128

                                                                       
Query: 61  cgtgtctgtgacacgtgccgctccgccacatgcaccgtcttctgccgcgctgactcggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cgtgtctgtgacacgtgccgctccgccacatgcaccgtcttctgccgcgctgactcggcg 188

                                                      
Query: 121 tatttgtgcgccgggtgcgacgcacaggtacatgcggcgaacc 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tatttgtgcgccgggtgcgacgcacaggtacatgcggcgaacc 231


>gnl|LJGI|AV769164 UniRef100_Q52ZI8 Cluster: CONSTANS-LIKE a; n=1; Pisum sativum|Rep:
            CONSTANS-LIKE a - Pisum sativum (Garden pea), partial
            (6%)
          Length = 324

 Score =  157 bits (79), Expect = 2e-37
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1122 tgtagaagctgaagttgatcagatgttctccacaacgctaatcacagaagttggatatgg 1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324  tgtagaagctgaagttgatcagatgttctccacaacgctaatcacagaagttggatatgg 265

                               
Query: 1182 cattgttccttccttctga 1200
            |||||||||||||||||||
Sbjct: 264  cattgttccttccttctga 246